Results 41 - 60 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8997 | 3' | -61.3 | NC_002512.2 | + | 210966 | 0.78 | 0.183541 |
Target: 5'- gGUCGUCCgGGC-CCUGuGucGCGCCUGCGUg -3' miRNA: 3'- -CAGCAGG-CCGuGGAC-C--UGCGGACGCA- -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 95995 | 0.69 | 0.59413 |
Target: 5'- -gCGUCCGGCGCC-GcGAcCGCCagGCGg -3' miRNA: 3'- caGCAGGCCGUGGaC-CU-GCGGa-CGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 124278 | 0.72 | 0.447416 |
Target: 5'- -aCGgCCGGUGCCUcGGCGCCUGCa- -3' miRNA: 3'- caGCaGGCCGUGGAcCUGCGGACGca -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 95017 | 0.66 | 0.763246 |
Target: 5'- cGUCGUCCGGgGCagggGGGCGgUcaggcugUGCGUg -3' miRNA: 3'- -CAGCAGGCCgUGga--CCUGCgG-------ACGCA- -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 23752 | 0.7 | 0.54665 |
Target: 5'- -cCGUCUGGCgACC-GGACGCCccgcUGCGc -3' miRNA: 3'- caGCAGGCCG-UGGaCCUGCGG----ACGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 55231 | 0.7 | 0.54665 |
Target: 5'- aUCGUgCGGCACCUGGAgaacgUGCCgGaCGa -3' miRNA: 3'- cAGCAgGCCGUGGACCU-----GCGGaC-GCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 100323 | 0.69 | 0.603723 |
Target: 5'- -aCGUcCCGGCGCCUcgggacuggcGGGCGCCgGCc- -3' miRNA: 3'- caGCA-GGCCGUGGA----------CCUGCGGaCGca -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 114015 | 0.69 | 0.620069 |
Target: 5'- cGUCGUCCGGCgggcccGCCUcGGcgaACGCCUcgaggcaggggcccGCGUc -3' miRNA: 3'- -CAGCAGGCCG------UGGA-CC---UGCGGA--------------CGCA- -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 13391 | 0.69 | 0.622957 |
Target: 5'- uUCGUCCGcUACCU-GACGCgCUGCGc -3' miRNA: 3'- cAGCAGGCcGUGGAcCUGCG-GACGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 124997 | 0.67 | 0.746103 |
Target: 5'- cGUCGgagugcaUCGGgGCCagGGACGCCcGCGg -3' miRNA: 3'- -CAGCa------GGCCgUGGa-CCUGCGGaCGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 8857 | 0.67 | 0.736948 |
Target: 5'- -cCGggCGGCACCccguUGGugGCC-GCGUg -3' miRNA: 3'- caGCagGCCGUGG----ACCugCGGaCGCA- -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 134315 | 0.67 | 0.727713 |
Target: 5'- cGUCGccggggCCGGCGCCgacGGAcuCGCC-GCGg -3' miRNA: 3'- -CAGCa-----GGCCGUGGa--CCU--GCGGaCGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 141443 | 0.67 | 0.718405 |
Target: 5'- -cCGccugCUGGU-CCgGGACGCCUGCGg -3' miRNA: 3'- caGCa---GGCCGuGGaCCUGCGGACGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 54405 | 0.67 | 0.718405 |
Target: 5'- -aCGUgCGGaacguCCUGGACGgCCUGCu- -3' miRNA: 3'- caGCAgGCCgu---GGACCUGC-GGACGca -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 130628 | 0.67 | 0.6996 |
Target: 5'- -gCGUCCGGCGuCCUcgGGGCGUcccucgacuuCUGCGc -3' miRNA: 3'- caGCAGGCCGU-GGA--CCUGCG----------GACGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 3139 | 0.67 | 0.707149 |
Target: 5'- cGUCGUCCGGCcggaGCCcGGucccgccgucguCGCCcGCGg -3' miRNA: 3'- -CAGCAGGCCG----UGGaCCu-----------GCGGaCGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 108715 | 0.68 | 0.690118 |
Target: 5'- cGUCGUCCGagaacgccucGC-CCUGGGCcgcgGCCgGCGUc -3' miRNA: 3'- -CAGCAGGC----------CGuGGACCUG----CGGaCGCA- -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 78611 | 0.68 | 0.686313 |
Target: 5'- uUCGUCCGGCGCCaucuUGGAUgacucacgGCCgaccgagaugaugGCGUc -3' miRNA: 3'- cAGCAGGCCGUGG----ACCUG--------CGGa------------CGCA- -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 67767 | 0.68 | 0.680594 |
Target: 5'- gGUCGucUCCGGCGCCgGGGuCGUCgGUGa -3' miRNA: 3'- -CAGC--AGGCCGUGGaCCU-GCGGaCGCa -5' |
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8997 | 3' | -61.3 | NC_002512.2 | + | 107805 | 0.68 | 0.651838 |
Target: 5'- -gCGUCCGGCGCgUGcGGCagccacuucaGCCUGCu- -3' miRNA: 3'- caGCAGGCCGUGgAC-CUG----------CGGACGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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