miRNA display CGI


Results 61 - 79 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8997 3' -61.3 NC_002512.2 + 67767 0.68 0.680594
Target:  5'- gGUCGucUCCGGCGCCgGGGuCGUCgGUGa -3'
miRNA:   3'- -CAGC--AGGCCGUGGaCCU-GCGGaCGCa -5'
8997 3' -61.3 NC_002512.2 + 58669 0.66 0.787817
Target:  5'- aGUCGaaagaUCCGGCGCgUGuugaaaaccagaucGGCGCCcGCGUu -3'
miRNA:   3'- -CAGC-----AGGCCGUGgAC--------------CUGCGGaCGCA- -5'
8997 3' -61.3 NC_002512.2 + 134981 0.66 0.781759
Target:  5'- uGUCuGcCCGGCgACCgGGACGCCUaccCGUu -3'
miRNA:   3'- -CAG-CaGGCCG-UGGaCCUGCGGAc--GCA- -5'
8997 3' -61.3 NC_002512.2 + 124618 0.66 0.773004
Target:  5'- cGUCGgcggcgUCGGCGCCUGGAU-CCgggUGCGc -3'
miRNA:   3'- -CAGCa-----GGCCGUGGACCUGcGG---ACGCa -5'
8997 3' -61.3 NC_002512.2 + 1298 0.66 0.773004
Target:  5'- --gGUCCGGCGCCUGc-CGCCgacacgaccGCGg -3'
miRNA:   3'- cagCAGGCCGUGGACcuGCGGa--------CGCa -5'
8997 3' -61.3 NC_002512.2 + 57046 0.66 0.773004
Target:  5'- -gCGUCCGaCgACCgggGGGCGCCggGCGa -3'
miRNA:   3'- caGCAGGCcG-UGGa--CCUGCGGa-CGCa -5'
8997 3' -61.3 NC_002512.2 + 24445 0.66 0.764139
Target:  5'- cGUCGUCCGaacGCACggugGGGCGCCUcuuaGCa- -3'
miRNA:   3'- -CAGCAGGC---CGUGga--CCUGCGGA----CGca -5'
8997 3' -61.3 NC_002512.2 + 134098 0.66 0.754266
Target:  5'- -gCGUccCCGGCGCCUaccgcucGGACGCCcccguccagGCGg -3'
miRNA:   3'- caGCA--GGCCGUGGA-------CCUGCGGa--------CGCa -5'
8997 3' -61.3 NC_002512.2 + 95017 0.66 0.763246
Target:  5'- cGUCGUCCGGgGCagggGGGCGgUcaggcugUGCGUg -3'
miRNA:   3'- -CAGCAGGCCgUGga--CCUGCgG-------ACGCA- -5'
8997 3' -61.3 NC_002512.2 + 124997 0.67 0.746103
Target:  5'- cGUCGgagugcaUCGGgGCCagGGACGCCcGCGg -3'
miRNA:   3'- -CAGCa------GGCCgUGGa-CCUGCGGaCGCa -5'
8997 3' -61.3 NC_002512.2 + 8857 0.67 0.736948
Target:  5'- -cCGggCGGCACCccguUGGugGCC-GCGUg -3'
miRNA:   3'- caGCagGCCGUGG----ACCugCGGaCGCA- -5'
8997 3' -61.3 NC_002512.2 + 134315 0.67 0.727713
Target:  5'- cGUCGccggggCCGGCGCCgacGGAcuCGCC-GCGg -3'
miRNA:   3'- -CAGCa-----GGCCGUGGa--CCU--GCGGaCGCa -5'
8997 3' -61.3 NC_002512.2 + 141443 0.67 0.718405
Target:  5'- -cCGccugCUGGU-CCgGGACGCCUGCGg -3'
miRNA:   3'- caGCa---GGCCGuGGaCCUGCGGACGCa -5'
8997 3' -61.3 NC_002512.2 + 54405 0.67 0.718405
Target:  5'- -aCGUgCGGaacguCCUGGACGgCCUGCu- -3'
miRNA:   3'- caGCAgGCCgu---GGACCUGC-GGACGca -5'
8997 3' -61.3 NC_002512.2 + 3139 0.67 0.707149
Target:  5'- cGUCGUCCGGCcggaGCCcGGucccgccgucguCGCCcGCGg -3'
miRNA:   3'- -CAGCAGGCCG----UGGaCCu-----------GCGGaCGCa -5'
8997 3' -61.3 NC_002512.2 + 130628 0.67 0.6996
Target:  5'- -gCGUCCGGCGuCCUcgGGGCGUcccucgacuuCUGCGc -3'
miRNA:   3'- caGCAGGCCGU-GGA--CCUGCG----------GACGCa -5'
8997 3' -61.3 NC_002512.2 + 108715 0.68 0.690118
Target:  5'- cGUCGUCCGagaacgccucGC-CCUGGGCcgcgGCCgGCGUc -3'
miRNA:   3'- -CAGCAGGC----------CGuGGACCUG----CGGaCGCA- -5'
8997 3' -61.3 NC_002512.2 + 78611 0.68 0.686313
Target:  5'- uUCGUCCGGCGCCaucuUGGAUgacucacgGCCgaccgagaugaugGCGUc -3'
miRNA:   3'- cAGCAGGCCGUGG----ACCUG--------CGGa------------CGCA- -5'
8997 3' -61.3 NC_002512.2 + 135254 0.76 0.253067
Target:  5'- cGUCGUCCGcGCcgcgcucgacgagGCCUGGGcCGCCUGCu- -3'
miRNA:   3'- -CAGCAGGC-CG-------------UGGACCU-GCGGACGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.