miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8997 3' -61.3 NC_002512.2 + 124997 0.67 0.746103
Target:  5'- cGUCGgagugcaUCGGgGCCagGGACGCCcGCGg -3'
miRNA:   3'- -CAGCa------GGCCgUGGa-CCUGCGGaCGCa -5'
8997 3' -61.3 NC_002512.2 + 8857 0.67 0.736948
Target:  5'- -cCGggCGGCACCccguUGGugGCC-GCGUg -3'
miRNA:   3'- caGCagGCCGUGG----ACCugCGGaCGCA- -5'
8997 3' -61.3 NC_002512.2 + 219267 0.67 0.736948
Target:  5'- cUCGUCCGGCAgggggcGGACGCCgacGcCGUg -3'
miRNA:   3'- cAGCAGGCCGUgga---CCUGCGGa--C-GCA- -5'
8997 3' -61.3 NC_002512.2 + 142548 0.67 0.734186
Target:  5'- cGUCGaCCGcGCACCgcGGAucgguccaccucauCGUCUGCGUg -3'
miRNA:   3'- -CAGCaGGC-CGUGGa-CCU--------------GCGGACGCA- -5'
8997 3' -61.3 NC_002512.2 + 223268 0.67 0.727713
Target:  5'- cGUCGUCgGGgGgCgGGACGCC-GCGc -3'
miRNA:   3'- -CAGCAGgCCgUgGaCCUGCGGaCGCa -5'
8997 3' -61.3 NC_002512.2 + 195294 0.67 0.727713
Target:  5'- -gCGggggCCGGCGCCgaaGGGCGCgaGCu- -3'
miRNA:   3'- caGCa---GGCCGUGGa--CCUGCGgaCGca -5'
8997 3' -61.3 NC_002512.2 + 134315 0.67 0.727713
Target:  5'- cGUCGccggggCCGGCGCCgacGGAcuCGCC-GCGg -3'
miRNA:   3'- -CAGCa-----GGCCGUGGa--CCU--GCGGaCGCa -5'
8997 3' -61.3 NC_002512.2 + 190535 0.67 0.727713
Target:  5'- gGUCGgggcgagggaCCGGCugCUGGGCaCCgagGCGg -3'
miRNA:   3'- -CAGCa---------GGCCGugGACCUGcGGa--CGCa -5'
8997 3' -61.3 NC_002512.2 + 54405 0.67 0.718405
Target:  5'- -aCGUgCGGaacguCCUGGACGgCCUGCu- -3'
miRNA:   3'- caGCAgGCCgu---GGACCUGC-GGACGca -5'
8997 3' -61.3 NC_002512.2 + 211134 0.67 0.718405
Target:  5'- cGUCGaggCCGaGgACCUGGGCGUCauccaggGCGUg -3'
miRNA:   3'- -CAGCa--GGC-CgUGGACCUGCGGa------CGCA- -5'
8997 3' -61.3 NC_002512.2 + 141443 0.67 0.718405
Target:  5'- -cCGccugCUGGU-CCgGGACGCCUGCGg -3'
miRNA:   3'- caGCa---GGCCGuGGaCCUGCGGACGCa -5'
8997 3' -61.3 NC_002512.2 + 193219 0.67 0.71747
Target:  5'- cGUUGcCCGGCAgCCUGGGggucaacUGCCgacgGCGg -3'
miRNA:   3'- -CAGCaGGCCGU-GGACCU-------GCGGa---CGCa -5'
8997 3' -61.3 NC_002512.2 + 115081 0.67 0.709031
Target:  5'- cGUCG-CgCGGCGCCUGGcCaCCcGCGUg -3'
miRNA:   3'- -CAGCaG-GCCGUGGACCuGcGGaCGCA- -5'
8997 3' -61.3 NC_002512.2 + 3139 0.67 0.707149
Target:  5'- cGUCGUCCGGCcggaGCCcGGucccgccgucguCGCCcGCGg -3'
miRNA:   3'- -CAGCAGGCCG----UGGaCCu-----------GCGGaCGCa -5'
8997 3' -61.3 NC_002512.2 + 105135 0.67 0.6996
Target:  5'- cGUCGUCgCcGCACCcgacGGACGCC-GUGUa -3'
miRNA:   3'- -CAGCAG-GcCGUGGa---CCUGCGGaCGCA- -5'
8997 3' -61.3 NC_002512.2 + 130628 0.67 0.6996
Target:  5'- -gCGUCCGGCGuCCUcgGGGCGUcccucgacuuCUGCGc -3'
miRNA:   3'- caGCAGGCCGU-GGA--CCUGCG----------GACGCa -5'
8997 3' -61.3 NC_002512.2 + 74554 0.67 0.6996
Target:  5'- cGUCuGUCUGGUccgccgcgACCUGGGCGCuCUG-GUg -3'
miRNA:   3'- -CAG-CAGGCCG--------UGGACCUGCG-GACgCA- -5'
8997 3' -61.3 NC_002512.2 + 133897 0.68 0.690118
Target:  5'- --gGUCgCGGCGCC-GGACGCCgaccgccgcUGCGc -3'
miRNA:   3'- cagCAG-GCCGUGGaCCUGCGG---------ACGCa -5'
8997 3' -61.3 NC_002512.2 + 108715 0.68 0.690118
Target:  5'- cGUCGUCCGagaacgccucGC-CCUGGGCcgcgGCCgGCGUc -3'
miRNA:   3'- -CAGCAGGC----------CGuGGACCUG----CGGaCGCA- -5'
8997 3' -61.3 NC_002512.2 + 165141 0.68 0.690118
Target:  5'- -cUGUUCGGCGCUaccgcguuggGGACGCCcguuUGCGUg -3'
miRNA:   3'- caGCAGGCCGUGGa---------CCUGCGG----ACGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.