miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8997 5' -54.2 NC_002512.2 + 110989 0.66 0.987679
Target:  5'- aCAGCGCGGgccCCGUguucuucacCGUGUACacccggCCGUACu -3'
miRNA:   3'- -GUUGUGCC---GGCA---------GCACAUG------GGCAUGu -5'
8997 5' -54.2 NC_002512.2 + 128684 0.66 0.987679
Target:  5'- gGACGgGGCCGUCGUGa--UCG-GCAa -3'
miRNA:   3'- gUUGUgCCGGCAGCACaugGGCaUGU- -5'
8997 5' -54.2 NC_002512.2 + 101609 0.66 0.987679
Target:  5'- ---gGCGGCCGUCG---GCCCG-GCGc -3'
miRNA:   3'- guugUGCCGGCAGCacaUGGGCaUGU- -5'
8997 5' -54.2 NC_002512.2 + 101114 0.66 0.987679
Target:  5'- -cGCGCGGCgCGgCGUGcGCUCGcGCAg -3'
miRNA:   3'- guUGUGCCG-GCaGCACaUGGGCaUGU- -5'
8997 5' -54.2 NC_002512.2 + 124257 0.66 0.987231
Target:  5'- aCGACACGGUgcacccgacggcggCGUCGg--ACCCGgGCGu -3'
miRNA:   3'- -GUUGUGCCG--------------GCAGCacaUGGGCaUGU- -5'
8997 5' -54.2 NC_002512.2 + 75248 0.66 0.986136
Target:  5'- gAGCGCGGCCG-CGU---CCCGUccccACGa -3'
miRNA:   3'- gUUGUGCCGGCaGCAcauGGGCA----UGU- -5'
8997 5' -54.2 NC_002512.2 + 154741 0.66 0.986136
Target:  5'- --cCGCGGCCGcguccgacggcgUCGcgGUGCCCGUc-- -3'
miRNA:   3'- guuGUGCCGGC------------AGCa-CAUGGGCAugu -5'
8997 5' -54.2 NC_002512.2 + 46416 0.66 0.984449
Target:  5'- gCAGCACGGCCuUgGUGgcgGCgCCG-ACGu -3'
miRNA:   3'- -GUUGUGCCGGcAgCACa--UG-GGCaUGU- -5'
8997 5' -54.2 NC_002512.2 + 116351 0.66 0.984449
Target:  5'- uCAACGCGGcCCG-CGgccugGUgACCCGcUGCGu -3'
miRNA:   3'- -GUUGUGCC-GGCaGCa----CA-UGGGC-AUGU- -5'
8997 5' -54.2 NC_002512.2 + 54306 0.66 0.982611
Target:  5'- -cGCACGGCgaCGUgGUGacccGCCgGUACAa -3'
miRNA:   3'- guUGUGCCG--GCAgCACa---UGGgCAUGU- -5'
8997 5' -54.2 NC_002512.2 + 203121 0.66 0.982611
Target:  5'- gGGCGuCGGCCGagUCGUGgGCCaucaccguggCGUACAg -3'
miRNA:   3'- gUUGU-GCCGGC--AGCACaUGG----------GCAUGU- -5'
8997 5' -54.2 NC_002512.2 + 146735 0.66 0.982611
Target:  5'- --cCGCGGCCGcCGg--GCCCG-ACGa -3'
miRNA:   3'- guuGUGCCGGCaGCacaUGGGCaUGU- -5'
8997 5' -54.2 NC_002512.2 + 29744 0.66 0.982611
Target:  5'- gAACAUGGCUGUCGUcGUAgaCG-ACAg -3'
miRNA:   3'- gUUGUGCCGGCAGCA-CAUggGCaUGU- -5'
8997 5' -54.2 NC_002512.2 + 130146 0.66 0.980613
Target:  5'- --uCGCGGCCG-CGgg-GCCCGgcgGCGg -3'
miRNA:   3'- guuGUGCCGGCaGCacaUGGGCa--UGU- -5'
8997 5' -54.2 NC_002512.2 + 45593 0.66 0.980613
Target:  5'- cCGAC-CGGCCGUgGUGgagagucuaucUACgagaCCGUGCAg -3'
miRNA:   3'- -GUUGuGCCGGCAgCAC-----------AUG----GGCAUGU- -5'
8997 5' -54.2 NC_002512.2 + 131891 0.66 0.980613
Target:  5'- cCAGCACGuGCuCGUCGaagGUcCCCGggGCGu -3'
miRNA:   3'- -GUUGUGC-CG-GCAGCa--CAuGGGCa-UGU- -5'
8997 5' -54.2 NC_002512.2 + 87214 0.67 0.976112
Target:  5'- gGugACGGCCcUCGU--GCCCGUGu- -3'
miRNA:   3'- gUugUGCCGGcAGCAcaUGGGCAUgu -5'
8997 5' -54.2 NC_002512.2 + 156016 0.67 0.976112
Target:  5'- cCAACccaGGUCGUUGUGUGauCCCGgGCGg -3'
miRNA:   3'- -GUUGug-CCGGCAGCACAU--GGGCaUGU- -5'
8997 5' -54.2 NC_002512.2 + 155238 0.67 0.973593
Target:  5'- --cCGCGGCCGUCcc--GCCCGUcGCGg -3'
miRNA:   3'- guuGUGCCGGCAGcacaUGGGCA-UGU- -5'
8997 5' -54.2 NC_002512.2 + 123411 0.67 0.973593
Target:  5'- aCGGCGaGGCgGUCGagGUcccgccGCCCGUGCGc -3'
miRNA:   3'- -GUUGUgCCGgCAGCa-CA------UGGGCAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.