miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8997 5' -54.2 NC_002512.2 + 186043 1.09 0.007737
Target:  5'- gCAACACGGCCGUCGUGUACCCGUACAa -3'
miRNA:   3'- -GUUGUGCCGGCAGCACAUGGGCAUGU- -5'
8997 5' -54.2 NC_002512.2 + 117990 0.76 0.630444
Target:  5'- -cGCGCGGCCGcUCGUcGUccaugcacgggguggACCCGUACGa -3'
miRNA:   3'- guUGUGCCGGC-AGCA-CA---------------UGGGCAUGU- -5'
8997 5' -54.2 NC_002512.2 + 119033 0.75 0.666422
Target:  5'- gGGC-CGGCCGUCGUGgGCCUGUuCGc -3'
miRNA:   3'- gUUGuGCCGGCAGCACaUGGGCAuGU- -5'
8997 5' -54.2 NC_002512.2 + 221766 0.74 0.705975
Target:  5'- gCAGCuggGCGGCCGUCGUGU-CCUG-GCGc -3'
miRNA:   3'- -GUUG---UGCCGGCAGCACAuGGGCaUGU- -5'
8997 5' -54.2 NC_002512.2 + 155974 0.74 0.738864
Target:  5'- gCAGCACGGCCuGUaCGUccccgcgcugagcgaGUGCCUGUACu -3'
miRNA:   3'- -GUUGUGCCGG-CA-GCA---------------CAUGGGCAUGu -5'
8997 5' -54.2 NC_002512.2 + 90936 0.73 0.753067
Target:  5'- cCGGCGCGGCCGccgccgUCGUgguggugGUGCUCGUGCu -3'
miRNA:   3'- -GUUGUGCCGGC------AGCA-------CAUGGGCAUGu -5'
8997 5' -54.2 NC_002512.2 + 122677 0.73 0.781661
Target:  5'- gCGGCucccCGGCCG-CGgcccggcugGUGCCCGUGCAc -3'
miRNA:   3'- -GUUGu---GCCGGCaGCa--------CAUGGGCAUGU- -5'
8997 5' -54.2 NC_002512.2 + 220390 0.73 0.790634
Target:  5'- gGGC-CGGCCGUCGUcUACCCGccGCu -3'
miRNA:   3'- gUUGuGCCGGCAGCAcAUGGGCa-UGu -5'
8997 5' -54.2 NC_002512.2 + 213001 0.72 0.808162
Target:  5'- --cCGCGGCCGUCGg--GCCCGggGCc -3'
miRNA:   3'- guuGUGCCGGCAGCacaUGGGCa-UGu -5'
8997 5' -54.2 NC_002512.2 + 31262 0.72 0.808163
Target:  5'- gGACGCGGaCGUguaCGUGUGCCCGgagUACGu -3'
miRNA:   3'- gUUGUGCCgGCA---GCACAUGGGC---AUGU- -5'
8997 5' -54.2 NC_002512.2 + 8468 0.72 0.808163
Target:  5'- gCAugGCGGCCGUCGgacagACCCGc--- -3'
miRNA:   3'- -GUugUGCCGGCAGCaca--UGGGCaugu -5'
8997 5' -54.2 NC_002512.2 + 178700 0.72 0.82508
Target:  5'- gCAGCGCGGCCGcCGcGUugCUGgcCAg -3'
miRNA:   3'- -GUUGUGCCGGCaGCaCAugGGCauGU- -5'
8997 5' -54.2 NC_002512.2 + 89360 0.72 0.825081
Target:  5'- uCGAgGCGGCCGUCcUG-GCgCCGUACGu -3'
miRNA:   3'- -GUUgUGCCGGCAGcACaUG-GGCAUGU- -5'
8997 5' -54.2 NC_002512.2 + 105624 0.72 0.825081
Target:  5'- cCGACGCcGCCGUCGgGUGCaCCGUGu- -3'
miRNA:   3'- -GUUGUGcCGGCAGCaCAUG-GGCAUgu -5'
8997 5' -54.2 NC_002512.2 + 184400 0.71 0.841328
Target:  5'- aCGAUGCuGCCGUCGUGUucggucaggaacACCCG-ACAu -3'
miRNA:   3'- -GUUGUGcCGGCAGCACA------------UGGGCaUGU- -5'
8997 5' -54.2 NC_002512.2 + 95950 0.71 0.878659
Target:  5'- gGACGCgGGCCGUCGg--GCcgccgCCGUACAg -3'
miRNA:   3'- gUUGUG-CCGGCAGCacaUG-----GGCAUGU- -5'
8997 5' -54.2 NC_002512.2 + 184981 0.71 0.878659
Target:  5'- -cGCGCGGCCGUCGacguggagcgcUGcgGCCCgGUGCc -3'
miRNA:   3'- guUGUGCCGGCAGC-----------ACa-UGGG-CAUGu -5'
8997 5' -54.2 NC_002512.2 + 79067 0.7 0.898582
Target:  5'- gCGGCGCGGUCGUCacgGcgACCCGUGa- -3'
miRNA:   3'- -GUUGUGCCGGCAGca-Ca-UGGGCAUgu -5'
8997 5' -54.2 NC_002512.2 + 104957 0.7 0.904785
Target:  5'- gCGGCGcCGGCC-UCGUGUcuCUCGUACGg -3'
miRNA:   3'- -GUUGU-GCCGGcAGCACAu-GGGCAUGU- -5'
8997 5' -54.2 NC_002512.2 + 67662 0.7 0.904785
Target:  5'- gGACGCGGgcucgaCCGUCGagugGUGCCCGUu-- -3'
miRNA:   3'- gUUGUGCC------GGCAGCa---CAUGGGCAugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.