miRNA display CGI


Results 41 - 60 of 439 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8998 3' -59.2 NC_002512.2 + 5813 0.66 0.898374
Target:  5'- cCGCCGcc--CCGuUCGGCGG-CGUCg -3'
miRNA:   3'- -GCGGCuuuaGGCcAGCCGCCgGCAGg -5'
8998 3' -59.2 NC_002512.2 + 116975 0.66 0.898374
Target:  5'- cCGCCGAcgccccGUCCGGgCGGgccgaCGGCCG-Ca -3'
miRNA:   3'- -GCGGCUu-----UAGGCCaGCC-----GCCGGCaGg -5'
8998 3' -59.2 NC_002512.2 + 30663 0.66 0.87934
Target:  5'- gCGCCGGAucuaCCGGgCGGC-GCgGUCg -3'
miRNA:   3'- -GCGGCUUua--GGCCaGCCGcCGgCAGg -5'
8998 3' -59.2 NC_002512.2 + 224657 0.66 0.902557
Target:  5'- gCGCCcGAGUUCGacuuucccgccgccGUCGGCuGGCCcgcgGUCCu -3'
miRNA:   3'- -GCGGcUUUAGGC--------------CAGCCG-CCGG----CAGG- -5'
8998 3' -59.2 NC_002512.2 + 100052 0.66 0.892228
Target:  5'- gCGCUGAGAcgCGGgggCGGCGGCg--CCg -3'
miRNA:   3'- -GCGGCUUUagGCCa--GCCGCCGgcaGG- -5'
8998 3' -59.2 NC_002512.2 + 101838 0.66 0.87934
Target:  5'- aCGCCGcGA-CC-GUCGG-GGCCGUgCa -3'
miRNA:   3'- -GCGGCuUUaGGcCAGCCgCCGGCAgG- -5'
8998 3' -59.2 NC_002512.2 + 90899 0.66 0.885882
Target:  5'- uCGuCCGGGAcggCCGGacUGGCGGCCG-Cg -3'
miRNA:   3'- -GC-GGCUUUa--GGCCa-GCCGCCGGCaGg -5'
8998 3' -59.2 NC_002512.2 + 219667 0.66 0.898374
Target:  5'- cCGUCGGGAUCUG---GGCGcGCCGcCCg -3'
miRNA:   3'- -GCGGCUUUAGGCcagCCGC-CGGCaGG- -5'
8998 3' -59.2 NC_002512.2 + 188783 0.66 0.904319
Target:  5'- gCGgCGGc-UCCGGccUCGGCGGCC--CCg -3'
miRNA:   3'- -GCgGCUuuAGGCC--AGCCGCCGGcaGG- -5'
8998 3' -59.2 NC_002512.2 + 124632 0.66 0.910058
Target:  5'- gCGCCuGGAUCCGGgugcgCGGCGcGgCGcUCa -3'
miRNA:   3'- -GCGGcUUUAGGCCa----GCCGC-CgGC-AGg -5'
8998 3' -59.2 NC_002512.2 + 120334 0.66 0.900777
Target:  5'- gGCgGAGAUCCGGUCcugcacccagaagggGGUGuaCGUgCa -3'
miRNA:   3'- gCGgCUUUAGGCCAG---------------CCGCcgGCAgG- -5'
8998 3' -59.2 NC_002512.2 + 90433 0.66 0.904319
Target:  5'- gGCgGAGAagggCaggaaGGgCGGCGGCCGggCCa -3'
miRNA:   3'- gCGgCUUUa---Gg----CCaGCCGCCGGCa-GG- -5'
8998 3' -59.2 NC_002512.2 + 172842 0.66 0.898374
Target:  5'- gCGCCcc---CCGGUCGucggacGCGGCC-UCCg -3'
miRNA:   3'- -GCGGcuuuaGGCCAGC------CGCCGGcAGG- -5'
8998 3' -59.2 NC_002512.2 + 55021 0.66 0.910058
Target:  5'- aCGUCGAucGAgagCCGGUCGG--GCCG-CCu -3'
miRNA:   3'- -GCGGCU--UUa--GGCCAGCCgcCGGCaGG- -5'
8998 3' -59.2 NC_002512.2 + 198712 0.66 0.910058
Target:  5'- aCGUCGAGGUCaccaGG-CGGUgcgucucccgGGCCagGUCCg -3'
miRNA:   3'- -GCGGCUUUAGg---CCaGCCG----------CCGG--CAGG- -5'
8998 3' -59.2 NC_002512.2 + 113318 0.66 0.892228
Target:  5'- gGCCaGGAGgggCUcGUCgcacaGGCGGCCGUUCa -3'
miRNA:   3'- gCGG-CUUUa--GGcCAG-----CCGCCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 88865 0.66 0.910058
Target:  5'- cCGCuCGAucUCgGcucuGUCGGUcGCCGUCCu -3'
miRNA:   3'- -GCG-GCUuuAGgC----CAGCCGcCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 10471 0.66 0.897161
Target:  5'- cCGCCGcc--CCGGgcgugggcgucgCGGCGGgCCGaCCa -3'
miRNA:   3'- -GCGGCuuuaGGCCa-----------GCCGCC-GGCaGG- -5'
8998 3' -59.2 NC_002512.2 + 2199 0.66 0.892228
Target:  5'- cCGCCGucgucGUCuCGGUCGcCGGCgGcgCCg -3'
miRNA:   3'- -GCGGCuu---UAG-GCCAGCcGCCGgCa-GG- -5'
8998 3' -59.2 NC_002512.2 + 106992 0.66 0.904319
Target:  5'- gGCCGGGAcgcCCGGgccggGGuCGGCCGagagCCg -3'
miRNA:   3'- gCGGCUUUa--GGCCag---CC-GCCGGCa---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.