miRNA display CGI


Results 21 - 40 of 439 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8998 3' -59.2 NC_002512.2 + 67728 0.76 0.388959
Target:  5'- gGCCGcuuUCgCGGUCGGCGuGCCGgCCu -3'
miRNA:   3'- gCGGCuuuAG-GCCAGCCGC-CGGCaGG- -5'
8998 3' -59.2 NC_002512.2 + 126161 0.76 0.386615
Target:  5'- uCGCCGcgGUCCGGUucaggaucaUGGCGGCgcccccucccgccgCGUCCg -3'
miRNA:   3'- -GCGGCuuUAGGCCA---------GCCGCCG--------------GCAGG- -5'
8998 3' -59.2 NC_002512.2 + 102347 0.76 0.388959
Target:  5'- aGCCG-GGUCCGGgCGuCGGUCGUCCg -3'
miRNA:   3'- gCGGCuUUAGGCCaGCcGCCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 81367 0.76 0.388959
Target:  5'- gGCCGggG-CgGG-CGGCGGCCG-CCu -3'
miRNA:   3'- gCGGCuuUaGgCCaGCCGCCGGCaGG- -5'
8998 3' -59.2 NC_002512.2 + 128798 0.76 0.404827
Target:  5'- gGCCGggGUCUucagcgagaGGUCGGCGGCgGcgCUg -3'
miRNA:   3'- gCGGCuuUAGG---------CCAGCCGCCGgCa-GG- -5'
8998 3' -59.2 NC_002512.2 + 218240 0.75 0.446225
Target:  5'- gCGCCGAuauauGUCCgGGUCGGCGuCC-UCCa -3'
miRNA:   3'- -GCGGCUu----UAGG-CCAGCCGCcGGcAGG- -5'
8998 3' -59.2 NC_002512.2 + 158867 0.75 0.421097
Target:  5'- uCGUCGAccggCCGG-CGGCGGCCccccGUCCu -3'
miRNA:   3'- -GCGGCUuua-GGCCaGCCGCCGG----CAGG- -5'
8998 3' -59.2 NC_002512.2 + 211777 0.75 0.421097
Target:  5'- aCGUgGAGGcCCGGguggccgCGGgGGCCGUCCc -3'
miRNA:   3'- -GCGgCUUUaGGCCa------GCCgCCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 212832 0.75 0.429379
Target:  5'- cCGCCGggGUUgGGcgCGG-GcGCCGUCCg -3'
miRNA:   3'- -GCGGCuuUAGgCCa-GCCgC-CGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 6675 0.75 0.436913
Target:  5'- gGCCGGGAcgcgcUCCGGgacgccguccccgUCgGGCGGCCcGUCCa -3'
miRNA:   3'- gCGGCUUU-----AGGCC-------------AG-CCGCCGG-CAGG- -5'
8998 3' -59.2 NC_002512.2 + 120761 0.75 0.446225
Target:  5'- aGuCCGAcGUgCUGGacUCGGCGGCCGUCg -3'
miRNA:   3'- gC-GGCUuUA-GGCC--AGCCGCCGGCAGg -5'
8998 3' -59.2 NC_002512.2 + 71248 0.75 0.429379
Target:  5'- aCGUCGggGUCgaaggGGUCGGa-GCCGUCCa -3'
miRNA:   3'- -GCGGCuuUAGg----CCAGCCgcCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 52410 0.75 0.421097
Target:  5'- gGCCGAGAagCGGUCGGCGGaCCu--- -3'
miRNA:   3'- gCGGCUUUagGCCAGCCGCC-GGcagg -5'
8998 3' -59.2 NC_002512.2 + 199291 0.75 0.437755
Target:  5'- gCGCCc---UCCGGUUGGUGGCC-UCCu -3'
miRNA:   3'- -GCGGcuuuAGGCCAGCCGCCGGcAGG- -5'
8998 3' -59.2 NC_002512.2 + 137793 0.74 0.480982
Target:  5'- gCGCuCGGcgggCCGcgcGUcCGGCGGCCGUCCg -3'
miRNA:   3'- -GCG-GCUuua-GGC---CA-GCCGCCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 96646 0.74 0.480982
Target:  5'- cCGCCGGGAU-CGGaCGGgcCGGCCGUCa -3'
miRNA:   3'- -GCGGCUUUAgGCCaGCC--GCCGGCAGg -5'
8998 3' -59.2 NC_002512.2 + 78953 0.74 0.489878
Target:  5'- cCGCCGGAgccuaaGUCCGGcUCGGacuuaGcGUCGUCCg -3'
miRNA:   3'- -GCGGCUU------UAGGCC-AGCCg----C-CGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 104763 0.74 0.489878
Target:  5'- uCGCCGucGUcCCGGUCGGaCGGCgCGUg- -3'
miRNA:   3'- -GCGGCuuUA-GGCCAGCC-GCCG-GCAgg -5'
8998 3' -59.2 NC_002512.2 + 102216 0.74 0.454785
Target:  5'- uCGCCGcgg-CCGGagCGGCccucgaccGGCCGUCCg -3'
miRNA:   3'- -GCGGCuuuaGGCCa-GCCG--------CCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 117047 0.74 0.498849
Target:  5'- uCGCCGAGAUgacggCCGuGUCccucaaccgGGUGGCCGUCa -3'
miRNA:   3'- -GCGGCUUUA-----GGC-CAG---------CCGCCGGCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.