miRNA display CGI


Results 41 - 60 of 439 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8998 3' -59.2 NC_002512.2 + 83795 0.74 0.478329
Target:  5'- cCGCCGAggaccgcgucgggcGcgCCGG-CGGCGGCgGcUCCg -3'
miRNA:   3'- -GCGGCU--------------UuaGGCCaGCCGCCGgC-AGG- -5'
8998 3' -59.2 NC_002512.2 + 158235 0.74 0.480982
Target:  5'- cCGCCcAAGUUCGGcUCGGUGGCCGa-- -3'
miRNA:   3'- -GCGGcUUUAGGCC-AGCCGCCGGCagg -5'
8998 3' -59.2 NC_002512.2 + 137793 0.74 0.480982
Target:  5'- gCGCuCGGcgggCCGcgcGUcCGGCGGCCGUCCg -3'
miRNA:   3'- -GCG-GCUuua-GGC---CA-GCCGCCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 96646 0.74 0.480982
Target:  5'- cCGCCGGGAU-CGGaCGGgcCGGCCGUCa -3'
miRNA:   3'- -GCGGCUUUAgGCCaGCC--GCCGGCAGg -5'
8998 3' -59.2 NC_002512.2 + 104763 0.74 0.489878
Target:  5'- uCGCCGucGUcCCGGUCGGaCGGCgCGUg- -3'
miRNA:   3'- -GCGGCuuUA-GGCCAGCC-GCCG-GCAgg -5'
8998 3' -59.2 NC_002512.2 + 78953 0.74 0.489878
Target:  5'- cCGCCGGAgccuaaGUCCGGcUCGGacuuaGcGUCGUCCg -3'
miRNA:   3'- -GCGGCUU------UAGGCC-AGCCg----C-CGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 117047 0.74 0.498849
Target:  5'- uCGCCGAGAUgacggCCGuGUCccucaaccgGGUGGCCGUCa -3'
miRNA:   3'- -GCGGCUUUA-----GGC-CAG---------CCGCCGGCAGg -5'
8998 3' -59.2 NC_002512.2 + 225418 0.74 0.498849
Target:  5'- gGUCGggGUCgGGUUGG-GGCCGacgCCg -3'
miRNA:   3'- gCGGCuuUAGgCCAGCCgCCGGCa--GG- -5'
8998 3' -59.2 NC_002512.2 + 148039 0.73 0.506985
Target:  5'- cCGCCGAcgcuccccgacccGGUCCGGcagaUCGagacgcgccGCGGUCGUCCg -3'
miRNA:   3'- -GCGGCU-------------UUAGGCC----AGC---------CGCCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 1965 0.73 0.507893
Target:  5'- cCGCCGGcg-UCGGa-GGCGGCgCGUCCg -3'
miRNA:   3'- -GCGGCUuuaGGCCagCCGCCG-GCAGG- -5'
8998 3' -59.2 NC_002512.2 + 186490 0.73 0.507893
Target:  5'- uCGCCGAGuucGUCCacuacGCGGCCGUCCg -3'
miRNA:   3'- -GCGGCUU---UAGGccagcCGCCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 157071 0.73 0.508801
Target:  5'- -cCCGggGUCCGGggucgccggcgcccaCGGCGGgcCCGUCCc -3'
miRNA:   3'- gcGGCuuUAGGCCa--------------GCCGCC--GGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 45487 0.73 0.517005
Target:  5'- gGCCGAGcgccccCCGG-CGGCGGCCacgCCg -3'
miRNA:   3'- gCGGCUUua----GGCCaGCCGCCGGca-GG- -5'
8998 3' -59.2 NC_002512.2 + 1859 0.73 0.517005
Target:  5'- uCGCCGccGUCCGGUCGccccucgucccGCGucCCGUCCg -3'
miRNA:   3'- -GCGGCuuUAGGCCAGC-----------CGCc-GGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 221724 0.73 0.517005
Target:  5'- aCGCCGAGAUCCccgagcgccuGG-CGGaCGcGCCGUCg -3'
miRNA:   3'- -GCGGCUUUAGG----------CCaGCC-GC-CGGCAGg -5'
8998 3' -59.2 NC_002512.2 + 204799 0.73 0.526182
Target:  5'- aCGCCcggGAGGUCCGcGUcccgggggcgCGGCGGCucCGUCCg -3'
miRNA:   3'- -GCGG---CUUUAGGC-CA----------GCCGCCG--GCAGG- -5'
8998 3' -59.2 NC_002512.2 + 166010 0.73 0.526182
Target:  5'- -cCCGAcggcUCCGGggacgcguUCGGCGGCCGuUCCg -3'
miRNA:   3'- gcGGCUuu--AGGCC--------AGCCGCCGGC-AGG- -5'
8998 3' -59.2 NC_002512.2 + 188638 0.73 0.526182
Target:  5'- gGCCGcAAGggcgCCGGcggcggCGGCGGCCcgucGUCCg -3'
miRNA:   3'- gCGGC-UUUa---GGCCa-----GCCGCCGG----CAGG- -5'
8998 3' -59.2 NC_002512.2 + 126445 0.73 0.53542
Target:  5'- gGCCGGcga-CGG-CGGCGGCCG-CCu -3'
miRNA:   3'- gCGGCUuuagGCCaGCCGCCGGCaGG- -5'
8998 3' -59.2 NC_002512.2 + 119704 0.73 0.53542
Target:  5'- gCGCgCGAGAagCGGcCGGcCGGCCGUgCg -3'
miRNA:   3'- -GCG-GCUUUagGCCaGCC-GCCGGCAgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.