miRNA display CGI


Results 41 - 60 of 439 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8998 3' -59.2 NC_002512.2 + 28221 0.67 0.836202
Target:  5'- uCGCCGAAGaaggaacCgCGGcCGG-GGCCGUCg -3'
miRNA:   3'- -GCGGCUUUa------G-GCCaGCCgCCGGCAGg -5'
8998 3' -59.2 NC_002512.2 + 29229 0.7 0.715442
Target:  5'- aCGCCGGccgCgGGUCGcGCaGuCCGUCCu -3'
miRNA:   3'- -GCGGCUuuaGgCCAGC-CGcC-GGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 29909 0.66 0.898374
Target:  5'- cCGCCGGGcgCgCGGacgCGGCGGgaGUgCa -3'
miRNA:   3'- -GCGGCUUuaG-GCCa--GCCGCCggCAgG- -5'
8998 3' -59.2 NC_002512.2 + 29948 0.78 0.315964
Target:  5'- uGCUGGAcagCCGGUgagCGGCGGCCGgCCg -3'
miRNA:   3'- gCGGCUUua-GGCCA---GCCGCCGGCaGG- -5'
8998 3' -59.2 NC_002512.2 + 30663 0.66 0.87934
Target:  5'- gCGCCGGAucuaCCGGgCGGC-GCgGUCg -3'
miRNA:   3'- -GCGGCUUua--GGCCaGCCGcCGgCAGg -5'
8998 3' -59.2 NC_002512.2 + 31711 0.66 0.892228
Target:  5'- uCGCCGAcgugGAgguccgCCGGcCGGCG-CCGaCCc -3'
miRNA:   3'- -GCGGCU----UUa-----GGCCaGCCGCcGGCaGG- -5'
8998 3' -59.2 NC_002512.2 + 32962 0.71 0.653028
Target:  5'- aCGCCGGGAgacgugugacgccgUUGGUCGacaCGGCCGUCUa -3'
miRNA:   3'- -GCGGCUUUa-------------GGCCAGCc--GCCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 33852 0.67 0.851289
Target:  5'- uGCCGG--UCauGUUGGCGaGCCgGUCCc -3'
miRNA:   3'- gCGGCUuuAGgcCAGCCGC-CGG-CAGG- -5'
8998 3' -59.2 NC_002512.2 + 34255 0.68 0.795755
Target:  5'- cCGCCGGucGUCCcGUCccgucuccagcaGGUGGCCGcCCc -3'
miRNA:   3'- -GCGGCUu-UAGGcCAG------------CCGCCGGCaGG- -5'
8998 3' -59.2 NC_002512.2 + 34390 0.69 0.733918
Target:  5'- gGCCGcguucgaCGGUgaugaugauUGGCGGCCGUCUu -3'
miRNA:   3'- gCGGCuuuag--GCCA---------GCCGCCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 35594 0.68 0.820465
Target:  5'- uGCC----UCCGuaGUUGGUGGCCGUUCc -3'
miRNA:   3'- gCGGcuuuAGGC--CAGCCGCCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 36564 0.7 0.687281
Target:  5'- cCGCUGGAG-CCGGgaggCGGCGGUgGagaccUCCa -3'
miRNA:   3'- -GCGGCUUUaGGCCa---GCCGCCGgC-----AGG- -5'
8998 3' -59.2 NC_002512.2 + 38390 0.66 0.910058
Target:  5'- gGaaGGGAgcgcgCCGGUCGcCGcGCUGUCCg -3'
miRNA:   3'- gCggCUUUa----GGCCAGCcGC-CGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 39275 0.68 0.81237
Target:  5'- aGCCGAGAUC--GUCGaGcCGGCUGaUCCg -3'
miRNA:   3'- gCGGCUUUAGgcCAGC-C-GCCGGC-AGG- -5'
8998 3' -59.2 NC_002512.2 + 39969 0.71 0.649205
Target:  5'- cCGCCGAGA-CCGGa--GCcGCCGUCCu -3'
miRNA:   3'- -GCGGCUUUaGGCCagcCGcCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 40230 0.67 0.836202
Target:  5'- gGCCGAcg-CCGGugUCGGCGcgucccgacgaaGCCGaCCg -3'
miRNA:   3'- gCGGCUuuaGGCC--AGCCGC------------CGGCaGG- -5'
8998 3' -59.2 NC_002512.2 + 41794 0.66 0.910058
Target:  5'- uCGCCGAuuGAUCCGGguagccCGGaaGGCCcaucguguGUCUg -3'
miRNA:   3'- -GCGGCU--UUAGGCCa-----GCCg-CCGG--------CAGG- -5'
8998 3' -59.2 NC_002512.2 + 41850 0.7 0.706108
Target:  5'- aGCUGAAGUCCauguugaaGUCGGgGGCCGa-- -3'
miRNA:   3'- gCGGCUUUAGGc-------CAGCCgCCGGCagg -5'
8998 3' -59.2 NC_002512.2 + 43291 0.67 0.836202
Target:  5'- uCGUCGAAcagGUCgGGguagaGGCGGCCGg-- -3'
miRNA:   3'- -GCGGCUU---UAGgCCag---CCGCCGGCagg -5'
8998 3' -59.2 NC_002512.2 + 43927 0.66 0.910058
Target:  5'- uGCCcucGAGcUCCaGGcgcUCGuaGGCCGUCCu -3'
miRNA:   3'- gCGG---CUUuAGG-CC---AGCcgCCGGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.