miRNA display CGI


Results 21 - 40 of 439 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8998 3' -59.2 NC_002512.2 + 151894 0.66 0.904319
Target:  5'- cCGCgGAucguuUCCGGUaGGCauGCCGUCg -3'
miRNA:   3'- -GCGgCUuu---AGGCCAgCCGc-CGGCAGg -5'
8998 3' -59.2 NC_002512.2 + 106992 0.66 0.904319
Target:  5'- gGCCGGGAcgcCCGGgccggGGuCGGCCGagagCCg -3'
miRNA:   3'- gCGGCUUUa--GGCCag---CC-GCCGGCa---GG- -5'
8998 3' -59.2 NC_002512.2 + 90433 0.66 0.904319
Target:  5'- gGCgGAGAagggCaggaaGGgCGGCGGCCGggCCa -3'
miRNA:   3'- gCGgCUUUa---Gg----CCaGCCGCCGGCa-GG- -5'
8998 3' -59.2 NC_002512.2 + 6097 0.66 0.904319
Target:  5'- cCGCCGAcGUCCc--CGGCGa-CGUCCg -3'
miRNA:   3'- -GCGGCUuUAGGccaGCCGCcgGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 137647 0.66 0.904319
Target:  5'- aGCCGGucGUCCGaGUCc-CGGUCGUCg -3'
miRNA:   3'- gCGGCUu-UAGGC-CAGccGCCGGCAGg -5'
8998 3' -59.2 NC_002512.2 + 84632 0.66 0.904319
Target:  5'- gGUCGucGUCCaGG-CGGCGGCCcaggaaGUUCu -3'
miRNA:   3'- gCGGCuuUAGG-CCaGCCGCCGG------CAGG- -5'
8998 3' -59.2 NC_002512.2 + 110542 0.66 0.904319
Target:  5'- gGCgGAGAaggcCCGGagcaccUCGGCGGCCaUCg -3'
miRNA:   3'- gCGgCUUUa---GGCC------AGCCGCCGGcAGg -5'
8998 3' -59.2 NC_002512.2 + 150935 0.66 0.904319
Target:  5'- aGCCGGAcUuaGGcucCGGCGGCCG-Cg -3'
miRNA:   3'- gCGGCUUuAggCCa--GCCGCCGGCaGg -5'
8998 3' -59.2 NC_002512.2 + 212149 0.66 0.904319
Target:  5'- gCGUCGgcGggcaCUGG-CGGCgggacggcugGGCCGUCCa -3'
miRNA:   3'- -GCGGCuuUa---GGCCaGCCG----------CCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 169062 0.66 0.904319
Target:  5'- gGCgCGAGGggcUCCGcGgCGGCGGCgucgcggcccgCGUCCu -3'
miRNA:   3'- gCG-GCUUU---AGGC-CaGCCGCCG-----------GCAGG- -5'
8998 3' -59.2 NC_002512.2 + 101760 0.66 0.904319
Target:  5'- cCGCCGccuGAccUUCGGcgagaCGGC-GCCGUCCu -3'
miRNA:   3'- -GCGGCu--UU--AGGCCa----GCCGcCGGCAGG- -5'
8998 3' -59.2 NC_002512.2 + 185191 0.66 0.904319
Target:  5'- -uCCGAGAaCgCGG-CGGCGGUCGacgCCg -3'
miRNA:   3'- gcGGCUUUaG-GCCaGCCGCCGGCa--GG- -5'
8998 3' -59.2 NC_002512.2 + 161838 0.66 0.904319
Target:  5'- cCGaCGAGGcuUCCGGacacggcgUCGGCGGUCcUCCc -3'
miRNA:   3'- -GCgGCUUU--AGGCC--------AGCCGCCGGcAGG- -5'
8998 3' -59.2 NC_002512.2 + 74596 0.66 0.904319
Target:  5'- gGCCGggGcccUCC-GUCGGCucgaGCCG-CCu -3'
miRNA:   3'- gCGGCuuU---AGGcCAGCCGc---CGGCaGG- -5'
8998 3' -59.2 NC_002512.2 + 188783 0.66 0.904319
Target:  5'- gCGgCGGc-UCCGGccUCGGCGGCC--CCg -3'
miRNA:   3'- -GCgGCUuuAGGCC--AGCCGCCGGcaGG- -5'
8998 3' -59.2 NC_002512.2 + 224657 0.66 0.902557
Target:  5'- gCGCCcGAGUUCGacuuucccgccgccGUCGGCuGGCCcgcgGUCCu -3'
miRNA:   3'- -GCGGcUUUAGGC--------------CAGCCG-CCGG----CAGG- -5'
8998 3' -59.2 NC_002512.2 + 109362 0.66 0.900777
Target:  5'- cCGCCGggGgaaagCCGcgccuccccgucaccGcgaUCGGCGGCguCGUCCc -3'
miRNA:   3'- -GCGGCuuUa----GGC---------------C---AGCCGCCG--GCAGG- -5'
8998 3' -59.2 NC_002512.2 + 120334 0.66 0.900777
Target:  5'- gGCgGAGAUCCGGUCcugcacccagaagggGGUGuaCGUgCa -3'
miRNA:   3'- gCGgCUUUAGGCCAG---------------CCGCcgGCAgG- -5'
8998 3' -59.2 NC_002512.2 + 116975 0.66 0.898374
Target:  5'- cCGCCGAcgccccGUCCGGgCGGgccgaCGGCCG-Ca -3'
miRNA:   3'- -GCGGCUu-----UAGGCCaGCC-----GCCGGCaGg -5'
8998 3' -59.2 NC_002512.2 + 22072 0.66 0.898374
Target:  5'- aCGCCG-AGUCgGGguUCGGaGaGCuCGUCCg -3'
miRNA:   3'- -GCGGCuUUAGgCC--AGCCgC-CG-GCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.