miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8998 5' -53.6 NC_002512.2 + 49222 0.67 0.980494
Target:  5'- uGAGAUCUUCGGGGccaccGCGGCggcCUGCc -3'
miRNA:   3'- gCUCUGGAGGCUCC-----UGCUGaa-GAUGc -5'
8998 5' -53.6 NC_002512.2 + 125154 0.67 0.984333
Target:  5'- gGGGGCC-CCGGGGGCgGGCgg--ACGg -3'
miRNA:   3'- gCUCUGGaGGCUCCUG-CUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 36588 0.68 0.973477
Target:  5'- gGAGACCUCC-AGGAgaGCcugCUGCGa -3'
miRNA:   3'- gCUCUGGAGGcUCCUgcUGaa-GAUGC- -5'
8998 5' -53.6 NC_002512.2 + 150039 0.68 0.970775
Target:  5'- aCGAGGgggCCGGGGACGACggg-GCGg -3'
miRNA:   3'- -GCUCUggaGGCUCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 209271 0.68 0.970775
Target:  5'- -cGGACCUCCuucGAGGACGuggagcgCUGCGu -3'
miRNA:   3'- gcUCUGGAGG---CUCCUGCugaa---GAUGC- -5'
8998 5' -53.6 NC_002512.2 + 223782 0.68 0.973477
Target:  5'- aGGGACCggacgucgCCGGGGACGuCggCgGCGa -3'
miRNA:   3'- gCUCUGGa-------GGCUCCUGCuGaaGaUGC- -5'
8998 5' -53.6 NC_002512.2 + 155305 0.68 0.973477
Target:  5'- cCGuGACCauggCCGAGGACGAUcUCg--- -3'
miRNA:   3'- -GCuCUGGa---GGCUCCUGCUGaAGaugc -5'
8998 5' -53.6 NC_002512.2 + 228048 0.68 0.975993
Target:  5'- gCGAGACgC-CCGcGGACGGCUgcgGCGc -3'
miRNA:   3'- -GCUCUG-GaGGCuCCUGCUGAagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 133841 0.68 0.964791
Target:  5'- gGAGGCCUcuccggaggacaCCGAGGACGucCUgggGCGg -3'
miRNA:   3'- gCUCUGGA------------GGCUCCUGCu-GAagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 121559 0.68 0.970775
Target:  5'- aCGAGACgcUgGAGGACGugUUCU-CGu -3'
miRNA:   3'- -GCUCUGgaGgCUCCUGCugAAGAuGC- -5'
8998 5' -53.6 NC_002512.2 + 22593 0.68 0.971879
Target:  5'- gGAGGCCacggugcuggacacgUCCGGGGagugcaugcGCGAgaUCUGCGa -3'
miRNA:   3'- gCUCUGG---------------AGGCUCC---------UGCUgaAGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 41113 0.68 0.970775
Target:  5'- aCGAGAUCUgaGAGGuuGGCUUCgaugGCa -3'
miRNA:   3'- -GCUCUGGAggCUCCugCUGAAGa---UGc -5'
8998 5' -53.6 NC_002512.2 + 211939 0.69 0.961496
Target:  5'- aCGGGACgUCCGuGGACGAgaggguCggCUGCu -3'
miRNA:   3'- -GCUCUGgAGGCuCCUGCU------GaaGAUGc -5'
8998 5' -53.6 NC_002512.2 + 193399 0.69 0.957995
Target:  5'- cCGAGugUUUcuucaucgaCGAGGACGACgacgaCUACGa -3'
miRNA:   3'- -GCUCugGAG---------GCUCCUGCUGaa---GAUGC- -5'
8998 5' -53.6 NC_002512.2 + 166442 0.69 0.950352
Target:  5'- cCGu--CCUCCGGGGGCGACg---GCGc -3'
miRNA:   3'- -GCucuGGAGGCUCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 87834 0.69 0.944482
Target:  5'- aGGGGCCgaggcgaaaugcgCCGAGG-CGAgCUUCUugGu -3'
miRNA:   3'- gCUCUGGa------------GGCUCCuGCU-GAAGAugC- -5'
8998 5' -53.6 NC_002512.2 + 15106 0.69 0.954281
Target:  5'- gGGGACC-CgGAGGGCGACcggcgccggaCUGCGa -3'
miRNA:   3'- gCUCUGGaGgCUCCUGCUGaa--------GAUGC- -5'
8998 5' -53.6 NC_002512.2 + 226902 0.69 0.957995
Target:  5'- aGAGcACCUCgGAGaGACGACg---GCGa -3'
miRNA:   3'- gCUC-UGGAGgCUC-CUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 108592 0.7 0.932419
Target:  5'- gGGGGCC-CCGGGGAgCGGCggCcGCGg -3'
miRNA:   3'- gCUCUGGaGGCUCCU-GCUGaaGaUGC- -5'
8998 5' -53.6 NC_002512.2 + 58012 0.7 0.932419
Target:  5'- gGGGACg-CCGAGGACGGCgUUCcGCc -3'
miRNA:   3'- gCUCUGgaGGCUCCUGCUG-AAGaUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.