miRNA display CGI


Results 61 - 80 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8998 5' -53.6 NC_002512.2 + 58012 0.7 0.932419
Target:  5'- gGGGACg-CCGAGGACGGCgUUCcGCc -3'
miRNA:   3'- gCUCUGgaGGCUCCUGCUG-AAGaUGc -5'
8998 5' -53.6 NC_002512.2 + 127534 0.7 0.922101
Target:  5'- cCGAGACUgcaggCCGAGGACGcGCUUgU-CGu -3'
miRNA:   3'- -GCUCUGGa----GGCUCCUGC-UGAAgAuGC- -5'
8998 5' -53.6 NC_002512.2 + 36226 0.71 0.910877
Target:  5'- gGAGACggucCCGAGGACGACg---GCGa -3'
miRNA:   3'- gCUCUGga--GGCUCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 101801 0.71 0.910877
Target:  5'- gGAGcGCUUCCGAGGA-GGCUUCcuggGCGc -3'
miRNA:   3'- gCUC-UGGAGGCUCCUgCUGAAGa---UGC- -5'
8998 5' -53.6 NC_002512.2 + 157262 0.71 0.898758
Target:  5'- --cGACCggCGAGGACGugUUCgugGCGc -3'
miRNA:   3'- gcuCUGGagGCUCCUGCugAAGa--UGC- -5'
8998 5' -53.6 NC_002512.2 + 9025 0.71 0.892368
Target:  5'- cCGAGGCC-CCGcGGACGACguagACGc -3'
miRNA:   3'- -GCUCUGGaGGCuCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 99920 0.71 0.898758
Target:  5'- gGGGGCCcgCCGaAGGGCGGCgucggCUGCu -3'
miRNA:   3'- gCUCUGGa-GGC-UCCUGCUGaa---GAUGc -5'
8998 5' -53.6 NC_002512.2 + 122900 0.72 0.864683
Target:  5'- gGAGACga-CGAGGACGACggcaUCUACu -3'
miRNA:   3'- gCUCUGgagGCUCCUGCUGa---AGAUGc -5'
8998 5' -53.6 NC_002512.2 + 209630 0.72 0.84182
Target:  5'- --cGGCCggaCGAGGACGACgacggCUGCGg -3'
miRNA:   3'- gcuCUGGag-GCUCCUGCUGaa---GAUGC- -5'
8998 5' -53.6 NC_002512.2 + 156448 0.72 0.84963
Target:  5'- gGGGGgCUCCGGGGGCGGCgggggacUCggggGCGg -3'
miRNA:   3'- gCUCUgGAGGCUCCUGCUGa------AGa---UGC- -5'
8998 5' -53.6 NC_002512.2 + 167498 0.72 0.84182
Target:  5'- aCGAGGCCgugUCCGAGGGCGcCa--UGCGg -3'
miRNA:   3'- -GCUCUGG---AGGCUCCUGCuGaagAUGC- -5'
8998 5' -53.6 NC_002512.2 + 128206 0.72 0.871914
Target:  5'- gCGGGACCggggaCGGGGACGACUgUCUcCa -3'
miRNA:   3'- -GCUCUGGag---GCUCCUGCUGA-AGAuGc -5'
8998 5' -53.6 NC_002512.2 + 17902 0.73 0.817333
Target:  5'- gCGGcGGCC-CCGAGGACGACggCcGCGu -3'
miRNA:   3'- -GCU-CUGGaGGCUCCUGCUGaaGaUGC- -5'
8998 5' -53.6 NC_002512.2 + 156836 0.74 0.773439
Target:  5'- gCGAGGCCUgCGGGGGCcGCUgCUGCc -3'
miRNA:   3'- -GCUCUGGAgGCUCCUGcUGAaGAUGc -5'
8998 5' -53.6 NC_002512.2 + 207873 0.74 0.773439
Target:  5'- gCGAG---UCCGGGGACGGCUUCUgGCGc -3'
miRNA:   3'- -GCUCuggAGGCUCCUGCUGAAGA-UGC- -5'
8998 5' -53.6 NC_002512.2 + 178235 0.74 0.791413
Target:  5'- aGGG-UCUCCGGGGACGGCgcggUCUcCGg -3'
miRNA:   3'- gCUCuGGAGGCUCCUGCUGa---AGAuGC- -5'
8998 5' -53.6 NC_002512.2 + 129088 0.74 0.754986
Target:  5'- --cGACC-CCGAGGACGgGCggcgUCUGCGg -3'
miRNA:   3'- gcuCUGGaGGCUCCUGC-UGa---AGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 11476 0.75 0.745601
Target:  5'- gGAGACCg-CGAGGACGACgacgACGg -3'
miRNA:   3'- gCUCUGGagGCUCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 11308 0.75 0.716916
Target:  5'- gGAGACCUCCGAGaGAUGGCcgaCgcgACGg -3'
miRNA:   3'- gCUCUGGAGGCUC-CUGCUGaa-Ga--UGC- -5'
8998 5' -53.6 NC_002512.2 + 97127 0.75 0.697435
Target:  5'- gGAGACCUUCGcccgccugcGGGACGACgccgcgCUGCGc -3'
miRNA:   3'- gCUCUGGAGGC---------UCCUGCUGaa----GAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.