Results 61 - 80 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8998 | 5' | -53.6 | NC_002512.2 | + | 103611 | 0.67 | 0.982493 |
Target: 5'- uCGAcGGCCUCCcgguaccgcugGAGGuCGGCUUCggACa -3' miRNA: 3'- -GCU-CUGGAGG-----------CUCCuGCUGAAGa-UGc -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 91869 | 0.67 | 0.982493 |
Target: 5'- cCGAGGCCgccgUCCGGcgcGGGCGGCggCgcgGCGc -3' miRNA: 3'- -GCUCUGG----AGGCU---CCUGCUGaaGa--UGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 226744 | 0.67 | 0.982493 |
Target: 5'- gCGGGACCgggcUCCGGccGGACGACgcggaggGCGa -3' miRNA: 3'- -GCUCUGG----AGGCU--CCUGCUGaaga---UGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 188558 | 0.67 | 0.984333 |
Target: 5'- uCGGGcAgCUCCGgcGGcGACGACUUCU-CGg -3' miRNA: 3'- -GCUC-UgGAGGC--UC-CUGCUGAAGAuGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 125154 | 0.67 | 0.984333 |
Target: 5'- gGGGGCC-CCGGGGGCgGGCgg--ACGg -3' miRNA: 3'- gCUCUGGaGGCUCCUG-CUGaagaUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 220873 | 0.67 | 0.986658 |
Target: 5'- gCGGGGCCUCgGcGcucuccaucguggccGACGACcUCUACGa -3' miRNA: 3'- -GCUCUGGAGgCuC---------------CUGCUGaAGAUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 104860 | 0.66 | 0.98757 |
Target: 5'- aGGGACCUCgCGcagcGGGCGGCgccgACGg -3' miRNA: 3'- gCUCUGGAG-GCu---CCUGCUGaagaUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 46791 | 0.66 | 0.98757 |
Target: 5'- uCGaAGACCUCCGucugaaGACGACgUCggACGa -3' miRNA: 3'- -GC-UCUGGAGGCuc----CUGCUGaAGa-UGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 98185 | 0.66 | 0.98757 |
Target: 5'- gCGGcGACCgUCCGAGGgAUGGCgUUCU-CGg -3' miRNA: 3'- -GCU-CUGG-AGGCUCC-UGCUG-AAGAuGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 123001 | 0.66 | 0.98757 |
Target: 5'- --cGACCUCCuGAGGAucCGGCUgcUCgUGCGc -3' miRNA: 3'- gcuCUGGAGG-CUCCU--GCUGA--AG-AUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 4611 | 0.66 | 0.98898 |
Target: 5'- gCGAGACggacgCCGAGGACGcCcUCcugGCGg -3' miRNA: 3'- -GCUCUGga---GGCUCCUGCuGaAGa--UGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 207747 | 0.66 | 0.990141 |
Target: 5'- gGGGACgCUCCGGGGugGAgccgccgccguggUggUUGCGg -3' miRNA: 3'- gCUCUG-GAGGCUCCugCU-------------GaaGAUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 47891 | 0.66 | 0.990263 |
Target: 5'- --uGACC-CCGAGGACGcCgccacCUACGu -3' miRNA: 3'- gcuCUGGaGGCUCCUGCuGaa---GAUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 134236 | 0.66 | 0.990263 |
Target: 5'- aGAGGCUgugCCGGGGGCGGCc------ -3' miRNA: 3'- gCUCUGGa--GGCUCCUGCUGaagaugc -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 192575 | 0.66 | 0.990263 |
Target: 5'- cCGGGGCCUCgGAgcGGACcgucccGCUgCUGCGg -3' miRNA: 3'- -GCUCUGGAGgCU--CCUGc-----UGAaGAUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 209062 | 0.66 | 0.991426 |
Target: 5'- aCGGcuCCUCCGAcGACGuCUUCgUGCGg -3' miRNA: 3'- -GCUcuGGAGGCUcCUGCuGAAG-AUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 12384 | 0.66 | 0.991426 |
Target: 5'- cCGAGcucGCCUUCGGGcGGCGGCg---GCGg -3' miRNA: 3'- -GCUC---UGGAGGCUC-CUGCUGaagaUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 89327 | 0.66 | 0.991426 |
Target: 5'- uGAcGACCUUCGAGGuagaggaccagaACGGCgUCgagGCGg -3' miRNA: 3'- gCU-CUGGAGGCUCC------------UGCUGaAGa--UGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 13237 | 0.66 | 0.991426 |
Target: 5'- --cGugCUgCG-GGACGACUUCcGCGu -3' miRNA: 3'- gcuCugGAgGCuCCUGCUGAAGaUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 94388 | 0.66 | 0.992477 |
Target: 5'- gCGuGGCCaugaUCuUGAGGACGGCggUCUugGc -3' miRNA: 3'- -GCuCUGG----AG-GCUCCUGCUGa-AGAugC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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