miRNA display CGI


Results 61 - 80 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8998 5' -53.6 NC_002512.2 + 159960 0.66 0.992477
Target:  5'- gGAGACCUaCCGGGaGAccuCGACcugCUACc -3'
miRNA:   3'- gCUCUGGA-GGCUC-CU---GCUGaa-GAUGc -5'
8998 5' -53.6 NC_002512.2 + 161841 0.67 0.97833
Target:  5'- aCGAGGCUUCCGGacACGGCgUCgGCGg -3'
miRNA:   3'- -GCUCUGGAGGCUccUGCUGaAGaUGC- -5'
8998 5' -53.6 NC_002512.2 + 162901 0.66 0.992477
Target:  5'- uGAGcCCUUCGAGGAgGACaccgccaacUUCcGCGu -3'
miRNA:   3'- gCUCuGGAGGCUCCUgCUG---------AAGaUGC- -5'
8998 5' -53.6 NC_002512.2 + 164165 0.67 0.980285
Target:  5'- uCGAGGacaccccgcccuaUCUCCGGGGccucgACGACUUCaUGCa -3'
miRNA:   3'- -GCUCU-------------GGAGGCUCC-----UGCUGAAG-AUGc -5'
8998 5' -53.6 NC_002512.2 + 166442 0.69 0.950352
Target:  5'- cCGu--CCUCCGGGGGCGACg---GCGc -3'
miRNA:   3'- -GCucuGGAGGCUCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 167165 0.66 0.993422
Target:  5'- gCGAGGCCgUCGAccGCGACgcgCUGCGc -3'
miRNA:   3'- -GCUCUGGaGGCUccUGCUGaa-GAUGC- -5'
8998 5' -53.6 NC_002512.2 + 167498 0.72 0.84182
Target:  5'- aCGAGGCCgugUCCGAGGGCGcCa--UGCGg -3'
miRNA:   3'- -GCUCUGG---AGGCUCCUGCuGaagAUGC- -5'
8998 5' -53.6 NC_002512.2 + 178235 0.74 0.791413
Target:  5'- aGGG-UCUCCGGGGACGGCgcggUCUcCGg -3'
miRNA:   3'- gCUCuGGAGGCUCCUGCUGa---AGAuGC- -5'
8998 5' -53.6 NC_002512.2 + 183714 0.75 0.745601
Target:  5'- gGAGACCUCCGAGGAgaucCG-CUUCg--- -3'
miRNA:   3'- gCUCUGGAGGCUCCU----GCuGAAGaugc -5'
8998 5' -53.6 NC_002512.2 + 184709 1.08 0.010111
Target:  5'- uCGAGACCUCCGAGGACGACUUCUACGc -3'
miRNA:   3'- -GCUCUGGAGGCUCCUGCUGAAGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 188558 0.67 0.984333
Target:  5'- uCGGGcAgCUCCGgcGGcGACGACUUCU-CGg -3'
miRNA:   3'- -GCUC-UgGAGGC--UC-CUGCUGAAGAuGC- -5'
8998 5' -53.6 NC_002512.2 + 192575 0.66 0.990263
Target:  5'- cCGGGGCCUCgGAgcGGACcgucccGCUgCUGCGg -3'
miRNA:   3'- -GCUCUGGAGgCU--CCUGc-----UGAaGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 193399 0.69 0.957995
Target:  5'- cCGAGugUUUcuucaucgaCGAGGACGACgacgaCUACGa -3'
miRNA:   3'- -GCUCugGAG---------GCUCCUGCUGaa---GAUGC- -5'
8998 5' -53.6 NC_002512.2 + 200255 0.66 0.993422
Target:  5'- gGGGACga-CGAGGACGACg---ACGg -3'
miRNA:   3'- gCUCUGgagGCUCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 201864 0.75 0.716916
Target:  5'- uGGGGCCugcggUCCGAGGACGGCg---GCGg -3'
miRNA:   3'- gCUCUGG-----AGGCUCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 207747 0.66 0.990141
Target:  5'- gGGGACgCUCCGGGGugGAgccgccgccguggUggUUGCGg -3'
miRNA:   3'- gCUCUG-GAGGCUCCugCU-------------GaaGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 207873 0.74 0.773439
Target:  5'- gCGAG---UCCGGGGACGGCUUCUgGCGc -3'
miRNA:   3'- -GCUCuggAGGCUCCUGCUGAAGA-UGC- -5'
8998 5' -53.6 NC_002512.2 + 209062 0.66 0.991426
Target:  5'- aCGGcuCCUCCGAcGACGuCUUCgUGCGg -3'
miRNA:   3'- -GCUcuGGAGGCUcCUGCuGAAG-AUGC- -5'
8998 5' -53.6 NC_002512.2 + 209271 0.68 0.970775
Target:  5'- -cGGACCUCCuucGAGGACGuggagcgCUGCGu -3'
miRNA:   3'- gcUCUGGAGG---CUCCUGCugaa---GAUGC- -5'
8998 5' -53.6 NC_002512.2 + 209630 0.72 0.84182
Target:  5'- --cGGCCggaCGAGGACGACgacggCUGCGg -3'
miRNA:   3'- gcuCUGGag-GCUCCUGCUGaa---GAUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.