miRNA display CGI


Results 81 - 94 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8998 5' -53.6 NC_002512.2 + 211939 0.69 0.961496
Target:  5'- aCGGGACgUCCGuGGACGAgaggguCggCUGCu -3'
miRNA:   3'- -GCUCUGgAGGCuCCUGCU------GaaGAUGc -5'
8998 5' -53.6 NC_002512.2 + 212392 0.66 0.993511
Target:  5'- uCGAGAUCgaggaggcggccgaCGAGGACGACgg--GCGg -3'
miRNA:   3'- -GCUCUGGag------------GCUCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 212536 0.67 0.980494
Target:  5'- uCGGGAUCgucgaCGGGGACGACgaugACGa -3'
miRNA:   3'- -GCUCUGGag---GCUCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 212962 0.77 0.598192
Target:  5'- aCGGcGCCUCCGGGGuCGAgaUCUGCGa -3'
miRNA:   3'- -GCUcUGGAGGCUCCuGCUgaAGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 213559 0.67 0.97833
Target:  5'- gCGGGguccGCCUCgaGAGGAgGACUUgaGCGa -3'
miRNA:   3'- -GCUC----UGGAGg-CUCCUgCUGAAgaUGC- -5'
8998 5' -53.6 NC_002512.2 + 220873 0.67 0.986658
Target:  5'- gCGGGGCCUCgGcGcucuccaucguggccGACGACcUCUACGa -3'
miRNA:   3'- -GCUCUGGAGgCuC---------------CUGCUGaAGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 221862 0.76 0.677746
Target:  5'- cCGGGACCUCuCGgagcggguGGGGCGAgUUCUGCu -3'
miRNA:   3'- -GCUCUGGAG-GC--------UCCUGCUgAAGAUGc -5'
8998 5' -53.6 NC_002512.2 + 223782 0.68 0.973477
Target:  5'- aGGGACCggacgucgCCGGGGACGuCggCgGCGa -3'
miRNA:   3'- gCUCUGGa-------GGCUCCUGCuGaaGaUGC- -5'
8998 5' -53.6 NC_002512.2 + 224043 0.86 0.225276
Target:  5'- aCGGGGCCgCCGGGGACGACUcgucgggcgUCUGCGa -3'
miRNA:   3'- -GCUCUGGaGGCUCCUGCUGA---------AGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 225542 0.75 0.707206
Target:  5'- gCGGGAgCgCgGAGGACGACUUCUucgGCGa -3'
miRNA:   3'- -GCUCUgGaGgCUCCUGCUGAAGA---UGC- -5'
8998 5' -53.6 NC_002512.2 + 226004 0.8 0.455196
Target:  5'- cCGGGACgccggugcugaCUCCGAGGACGACguccgcuccgUCUACGa -3'
miRNA:   3'- -GCUCUG-----------GAGGCUCCUGCUGa---------AGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 226744 0.67 0.982493
Target:  5'- gCGGGACCgggcUCCGGccGGACGACgcggaggGCGa -3'
miRNA:   3'- -GCUCUGG----AGGCU--CCUGCUGaaga---UGC- -5'
8998 5' -53.6 NC_002512.2 + 226902 0.69 0.957995
Target:  5'- aGAGcACCUCgGAGaGACGACg---GCGa -3'
miRNA:   3'- gCUC-UGGAGgCUC-CUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 228048 0.68 0.975993
Target:  5'- gCGAGACgC-CCGcGGACGGCUgcgGCGc -3'
miRNA:   3'- -GCUCUG-GaGGCuCCUGCUGAagaUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.