Results 41 - 60 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8998 | 5' | -53.6 | NC_002512.2 | + | 145255 | 0.67 | 0.980494 |
Target: 5'- -uGGGCCgCCGccuGGACGACgaccugCUGCGg -3' miRNA: 3'- gcUCUGGaGGCu--CCUGCUGaa----GAUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 143369 | 0.66 | 0.992477 |
Target: 5'- uGGGGCCUCCccgcucaAGGACGGCUauaaaccgUCUccucACGu -3' miRNA: 3'- gCUCUGGAGGc------UCCUGCUGA--------AGA----UGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 142260 | 0.66 | 0.992477 |
Target: 5'- uGGGAuccggucgucguCCgggCCGGGGACGGCgUCgACGg -3' miRNA: 3'- gCUCU------------GGa--GGCUCCUGCUGaAGaUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 138431 | 0.75 | 0.726558 |
Target: 5'- --uGACCUUCGAGGugGAacaCUUCUGCc -3' miRNA: 3'- gcuCUGGAGGCUCCugCU---GAAGAUGc -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 138054 | 0.67 | 0.97833 |
Target: 5'- gCGGGACCggaUCCGGGuGACGAacacgagaCUgCUGCGu -3' miRNA: 3'- -GCUCUGG---AGGCUC-CUGCU--------GAaGAUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 134651 | 0.66 | 0.993422 |
Target: 5'- -cGGAcgcccCCUCCgGAGaACGAUUUCUACGa -3' miRNA: 3'- gcUCU-----GGAGG-CUCcUGCUGAAGAUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 134236 | 0.66 | 0.990263 |
Target: 5'- aGAGGCUgugCCGGGGGCGGCc------ -3' miRNA: 3'- gCUCUGGa--GGCUCCUGCUGaagaugc -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 133841 | 0.68 | 0.964791 |
Target: 5'- gGAGGCCUcuccggaggacaCCGAGGACGucCUgggGCGg -3' miRNA: 3'- gCUCUGGA------------GGCUCCUGCu-GAagaUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 130978 | 0.75 | 0.707206 |
Target: 5'- gGAGACCUCgGAGGAgGAgaUCggGCGa -3' miRNA: 3'- gCUCUGGAGgCUCCUgCUgaAGa-UGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 130664 | 0.76 | 0.677746 |
Target: 5'- gCGGGGCuCUCCGAGGACcggGACgggCUGCu -3' miRNA: 3'- -GCUCUG-GAGGCUCCUG---CUGaa-GAUGc -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 130257 | 0.8 | 0.455196 |
Target: 5'- cCGGGcCCUCCGAGGGCGACgaCcGCGa -3' miRNA: 3'- -GCUCuGGAGGCUCCUGCUGaaGaUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 129088 | 0.74 | 0.754986 |
Target: 5'- --cGACC-CCGAGGACGgGCggcgUCUGCGg -3' miRNA: 3'- gcuCUGGaGGCUCCUGC-UGa---AGAUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 128569 | 0.77 | 0.608127 |
Target: 5'- uCGAcGGCCUCCGGGGGcCGACc-CUGCGa -3' miRNA: 3'- -GCU-CUGGAGGCUCCU-GCUGaaGAUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 128206 | 0.72 | 0.871914 |
Target: 5'- gCGGGACCggggaCGGGGACGACUgUCUcCa -3' miRNA: 3'- -GCUCUGGag---GCUCCUGCUGA-AGAuGc -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 127534 | 0.7 | 0.922101 |
Target: 5'- cCGAGACUgcaggCCGAGGACGcGCUUgU-CGu -3' miRNA: 3'- -GCUCUGGa----GGCUCCUGC-UGAAgAuGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 125154 | 0.67 | 0.984333 |
Target: 5'- gGGGGCC-CCGGGGGCgGGCgg--ACGg -3' miRNA: 3'- gCUCUGGaGGCUCCUG-CUGaagaUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 123174 | 0.66 | 0.992477 |
Target: 5'- cCGAGGCCgaggCCGAGGcGgGACggg-ACGa -3' miRNA: 3'- -GCUCUGGa---GGCUCC-UgCUGaagaUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 123001 | 0.66 | 0.98757 |
Target: 5'- --cGACCUCCuGAGGAucCGGCUgcUCgUGCGc -3' miRNA: 3'- gcuCUGGAGG-CUCCU--GCUGA--AG-AUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 122900 | 0.72 | 0.864683 |
Target: 5'- gGAGACga-CGAGGACGACggcaUCUACu -3' miRNA: 3'- gCUCUGgagGCUCCUGCUGa---AGAUGc -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 121559 | 0.68 | 0.970775 |
Target: 5'- aCGAGACgcUgGAGGACGugUUCU-CGu -3' miRNA: 3'- -GCUCUGgaGgCUCCUGCugAAGAuGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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