Results 61 - 80 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8998 | 5' | -53.6 | NC_002512.2 | + | 108592 | 0.7 | 0.932419 |
Target: 5'- gGGGGCC-CCGGGGAgCGGCggCcGCGg -3' miRNA: 3'- gCUCUGGaGGCUCCU-GCUGaaGaUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 108370 | 0.66 | 0.992477 |
Target: 5'- gGAGcuCC-CCGAGGAUGACgUUCaUGCu -3' miRNA: 3'- gCUCu-GGaGGCUCCUGCUG-AAG-AUGc -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 104860 | 0.66 | 0.98757 |
Target: 5'- aGGGACCUCgCGcagcGGGCGGCgccgACGg -3' miRNA: 3'- gCUCUGGAG-GCu---CCUGCUGaagaUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 103893 | 0.66 | 0.993332 |
Target: 5'- aCGAGACCUUCacGGcccugaaGCG-CUUCUGCGu -3' miRNA: 3'- -GCUCUGGAGGcuCC-------UGCuGAAGAUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 103611 | 0.67 | 0.982493 |
Target: 5'- uCGAcGGCCUCCcgguaccgcugGAGGuCGGCUUCggACa -3' miRNA: 3'- -GCU-CUGGAGG-----------CUCCuGCUGAAGa-UGc -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 101801 | 0.71 | 0.910877 |
Target: 5'- gGAGcGCUUCCGAGGA-GGCUUCcuggGCGc -3' miRNA: 3'- gCUC-UGGAGGCUCCUgCUGAAGa---UGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 100069 | 0.66 | 0.993422 |
Target: 5'- gGGGGCCgcgggCCGGGGACGGa----GCGg -3' miRNA: 3'- gCUCUGGa----GGCUCCUGCUgaagaUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 99920 | 0.71 | 0.898758 |
Target: 5'- gGGGGCCcgCCGaAGGGCGGCgucggCUGCu -3' miRNA: 3'- gCUCUGGa-GGC-UCCUGCUGaa---GAUGc -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 98185 | 0.66 | 0.98757 |
Target: 5'- gCGGcGACCgUCCGAGGgAUGGCgUUCU-CGg -3' miRNA: 3'- -GCU-CUGG-AGGCUCC-UGCUG-AAGAuGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 97127 | 0.75 | 0.697435 |
Target: 5'- gGAGACCUUCGcccgccugcGGGACGACgccgcgCUGCGc -3' miRNA: 3'- gCUCUGGAGGC---------UCCUGCUGaa----GAUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 94388 | 0.66 | 0.992477 |
Target: 5'- gCGuGGCCaugaUCuUGAGGACGGCggUCUugGc -3' miRNA: 3'- -GCuCUGG----AG-GCUCCUGCUGa-AGAugC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 91869 | 0.67 | 0.982493 |
Target: 5'- cCGAGGCCgccgUCCGGcgcGGGCGGCggCgcgGCGc -3' miRNA: 3'- -GCUCUGG----AGGCU---CCUGCUGaaGa--UGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 90500 | 0.67 | 0.97833 |
Target: 5'- aCGGGAUCggggCCGAGGcCGGCggCggACGa -3' miRNA: 3'- -GCUCUGGa---GGCUCCuGCUGaaGa-UGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 89327 | 0.66 | 0.991426 |
Target: 5'- uGAcGACCUUCGAGGuagaggaccagaACGGCgUCgagGCGg -3' miRNA: 3'- gCU-CUGGAGGCUCC------------UGCUGaAGa--UGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 87834 | 0.69 | 0.944482 |
Target: 5'- aGGGGCCgaggcgaaaugcgCCGAGG-CGAgCUUCUugGu -3' miRNA: 3'- gCUCUGGa------------GGCUCCuGCU-GAAGAugC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 81824 | 0.7 | 0.916602 |
Target: 5'- gCGAGGUCUCCGAgaGGACGACg---ACGa -3' miRNA: 3'- -GCUCUGGAGGCU--CCUGCUGaagaUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 58012 | 0.7 | 0.932419 |
Target: 5'- gGGGACg-CCGAGGACGGCgUUCcGCc -3' miRNA: 3'- gCUCUGgaGGCUCCUGCUG-AAGaUGc -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 49462 | 0.77 | 0.638006 |
Target: 5'- cCGGGgcGCCgucaCCGAGGACGACUUCgacUACGc -3' miRNA: 3'- -GCUC--UGGa---GGCUCCUGCUGAAG---AUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 49222 | 0.67 | 0.980494 |
Target: 5'- uGAGAUCUUCGGGGccaccGCGGCggcCUGCc -3' miRNA: 3'- gCUCUGGAGGCUCC-----UGCUGaa-GAUGc -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 47891 | 0.66 | 0.990263 |
Target: 5'- --uGACC-CCGAGGACGcCgccacCUACGu -3' miRNA: 3'- gcuCUGGaGGCUCCUGCuGaa---GAUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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