miRNA display CGI


Results 81 - 94 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8998 5' -53.6 NC_002512.2 + 98185 0.66 0.98757
Target:  5'- gCGGcGACCgUCCGAGGgAUGGCgUUCU-CGg -3'
miRNA:   3'- -GCU-CUGG-AGGCUCC-UGCUG-AAGAuGC- -5'
8998 5' -53.6 NC_002512.2 + 90500 0.67 0.97833
Target:  5'- aCGGGAUCggggCCGAGGcCGGCggCggACGa -3'
miRNA:   3'- -GCUCUGGa---GGCUCCuGCUGaaGa-UGC- -5'
8998 5' -53.6 NC_002512.2 + 138054 0.67 0.97833
Target:  5'- gCGGGACCggaUCCGGGuGACGAacacgagaCUgCUGCGu -3'
miRNA:   3'- -GCUCUGG---AGGCUC-CUGCU--------GAaGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 161841 0.67 0.97833
Target:  5'- aCGAGGCUUCCGGacACGGCgUCgGCGg -3'
miRNA:   3'- -GCUCUGGAGGCUccUGCUGaAGaUGC- -5'
8998 5' -53.6 NC_002512.2 + 213559 0.67 0.97833
Target:  5'- gCGGGguccGCCUCgaGAGGAgGACUUgaGCGa -3'
miRNA:   3'- -GCUC----UGGAGg-CUCCUgCUGAAgaUGC- -5'
8998 5' -53.6 NC_002512.2 + 164165 0.67 0.980285
Target:  5'- uCGAGGacaccccgcccuaUCUCCGGGGccucgACGACUUCaUGCa -3'
miRNA:   3'- -GCUCU-------------GGAGGCUCC-----UGCUGAAG-AUGc -5'
8998 5' -53.6 NC_002512.2 + 145255 0.67 0.980494
Target:  5'- -uGGGCCgCCGccuGGACGACgaccugCUGCGg -3'
miRNA:   3'- gcUCUGGaGGCu--CCUGCUGaa----GAUGC- -5'
8998 5' -53.6 NC_002512.2 + 212536 0.67 0.980494
Target:  5'- uCGGGAUCgucgaCGGGGACGACgaugACGa -3'
miRNA:   3'- -GCUCUGGag---GCUCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 103611 0.67 0.982493
Target:  5'- uCGAcGGCCUCCcgguaccgcugGAGGuCGGCUUCggACa -3'
miRNA:   3'- -GCU-CUGGAGG-----------CUCCuGCUGAAGa-UGc -5'
8998 5' -53.6 NC_002512.2 + 91869 0.67 0.982493
Target:  5'- cCGAGGCCgccgUCCGGcgcGGGCGGCggCgcgGCGc -3'
miRNA:   3'- -GCUCUGG----AGGCU---CCUGCUGaaGa--UGC- -5'
8998 5' -53.6 NC_002512.2 + 226744 0.67 0.982493
Target:  5'- gCGGGACCgggcUCCGGccGGACGACgcggaggGCGa -3'
miRNA:   3'- -GCUCUGG----AGGCU--CCUGCUGaaga---UGC- -5'
8998 5' -53.6 NC_002512.2 + 188558 0.67 0.984333
Target:  5'- uCGGGcAgCUCCGgcGGcGACGACUUCU-CGg -3'
miRNA:   3'- -GCUC-UgGAGGC--UC-CUGCUGAAGAuGC- -5'
8998 5' -53.6 NC_002512.2 + 220873 0.67 0.986658
Target:  5'- gCGGGGCCUCgGcGcucuccaucguggccGACGACcUCUACGa -3'
miRNA:   3'- -GCUCUGGAGgCuC---------------CUGCUGaAGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 212392 0.66 0.993511
Target:  5'- uCGAGAUCgaggaggcggccgaCGAGGACGACgg--GCGg -3'
miRNA:   3'- -GCUCUGGag------------GCUCCUGCUGaagaUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.