miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8998 5' -53.6 NC_002512.2 + 36226 0.71 0.910877
Target:  5'- gGAGACggucCCGAGGACGACg---GCGa -3'
miRNA:   3'- gCUCUGga--GGCUCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 228048 0.68 0.975993
Target:  5'- gCGAGACgC-CCGcGGACGGCUgcgGCGc -3'
miRNA:   3'- -GCUCUG-GaGGCuCCUGCUGAagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 178235 0.74 0.791413
Target:  5'- aGGG-UCUCCGGGGACGGCgcggUCUcCGg -3'
miRNA:   3'- gCUCuGGAGGCUCCUGCUGa---AGAuGC- -5'
8998 5' -53.6 NC_002512.2 + 90500 0.67 0.97833
Target:  5'- aCGGGAUCggggCCGAGGcCGGCggCggACGa -3'
miRNA:   3'- -GCUCUGGa---GGCUCCuGCUGaaGa-UGC- -5'
8998 5' -53.6 NC_002512.2 + 184709 1.08 0.010111
Target:  5'- uCGAGACCUCCGAGGACGACUUCUACGc -3'
miRNA:   3'- -GCUCUGGAGGCUCCUGCUGAAGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 223782 0.68 0.973477
Target:  5'- aGGGACCggacgucgCCGGGGACGuCggCgGCGa -3'
miRNA:   3'- gCUCUGGa-------GGCUCCUGCuGaaGaUGC- -5'
8998 5' -53.6 NC_002512.2 + 41113 0.68 0.970775
Target:  5'- aCGAGAUCUgaGAGGuuGGCUUCgaugGCa -3'
miRNA:   3'- -GCUCUGGAggCUCCugCUGAAGa---UGc -5'
8998 5' -53.6 NC_002512.2 + 130978 0.75 0.707206
Target:  5'- gGAGACCUCgGAGGAgGAgaUCggGCGa -3'
miRNA:   3'- gCUCUGGAGgCUCCUgCUgaAGa-UGC- -5'
8998 5' -53.6 NC_002512.2 + 225542 0.75 0.707206
Target:  5'- gCGGGAgCgCgGAGGACGACUUCUucgGCGa -3'
miRNA:   3'- -GCUCUgGaGgCUCCUGCUGAAGA---UGC- -5'
8998 5' -53.6 NC_002512.2 + 138431 0.75 0.726558
Target:  5'- --uGACCUUCGAGGugGAacaCUUCUGCc -3'
miRNA:   3'- gcuCUGGAGGCUCCugCU---GAAGAUGc -5'
8998 5' -53.6 NC_002512.2 + 183714 0.75 0.745601
Target:  5'- gGAGACCUCCGAGGAgaucCG-CUUCg--- -3'
miRNA:   3'- gCUCUGGAGGCUCCU----GCuGAAGaugc -5'
8998 5' -53.6 NC_002512.2 + 224043 0.86 0.225276
Target:  5'- aCGGGGCCgCCGGGGACGACUcgucgggcgUCUGCGa -3'
miRNA:   3'- -GCUCUGGaGGCUCCUGCUGA---------AGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 167498 0.72 0.84182
Target:  5'- aCGAGGCCgugUCCGAGGGCGcCa--UGCGg -3'
miRNA:   3'- -GCUCUGG---AGGCUCCUGCuGaagAUGC- -5'
8998 5' -53.6 NC_002512.2 + 209630 0.72 0.84182
Target:  5'- --cGGCCggaCGAGGACGACgacggCUGCGg -3'
miRNA:   3'- gcuCUGGag-GCUCCUGCUGaa---GAUGC- -5'
8998 5' -53.6 NC_002512.2 + 122900 0.72 0.864683
Target:  5'- gGAGACga-CGAGGACGACggcaUCUACu -3'
miRNA:   3'- gCUCUGgagGCUCCUGCUGa---AGAUGc -5'
8998 5' -53.6 NC_002512.2 + 157262 0.71 0.898758
Target:  5'- --cGACCggCGAGGACGugUUCgugGCGc -3'
miRNA:   3'- gcuCUGGagGCUCCUGCugAAGa--UGC- -5'
8998 5' -53.6 NC_002512.2 + 81824 0.7 0.916602
Target:  5'- gCGAGGUCUCCGAgaGGACGACg---ACGa -3'
miRNA:   3'- -GCUCUGGAGGCU--CCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 127534 0.7 0.922101
Target:  5'- cCGAGACUgcaggCCGAGGACGcGCUUgU-CGu -3'
miRNA:   3'- -GCUCUGGa----GGCUCCUGC-UGAAgAuGC- -5'
8998 5' -53.6 NC_002512.2 + 226004 0.8 0.455196
Target:  5'- cCGGGACgccggugcugaCUCCGAGGACGACguccgcuccgUCUACGa -3'
miRNA:   3'- -GCUCUG-----------GAGGCUCCUGCUGa---------AGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 12384 0.66 0.991426
Target:  5'- cCGAGcucGCCUUCGGGcGGCGGCg---GCGg -3'
miRNA:   3'- -GCUC---UGGAGGCUC-CUGCUGaagaUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.