miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8998 5' -53.6 NC_002512.2 + 150039 0.68 0.970775
Target:  5'- aCGAGGgggCCGGGGACGACggg-GCGg -3'
miRNA:   3'- -GCUCUggaGGCUCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 138431 0.75 0.726558
Target:  5'- --uGACCUUCGAGGugGAacaCUUCUGCc -3'
miRNA:   3'- gcuCUGGAGGCUCCugCU---GAAGAUGc -5'
8998 5' -53.6 NC_002512.2 + 224043 0.86 0.225276
Target:  5'- aCGGGGCCgCCGGGGACGACUcgucgggcgUCUGCGa -3'
miRNA:   3'- -GCUCUGGaGGCUCCUGCUGA---------AGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 156836 0.74 0.773439
Target:  5'- gCGAGGCCUgCGGGGGCcGCUgCUGCc -3'
miRNA:   3'- -GCUCUGGAgGCUCCUGcUGAaGAUGc -5'
8998 5' -53.6 NC_002512.2 + 81824 0.7 0.916602
Target:  5'- gCGAGGUCUCCGAgaGGACGACg---ACGa -3'
miRNA:   3'- -GCUCUGGAGGCU--CCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 209271 0.68 0.970775
Target:  5'- -cGGACCUCCuucGAGGACGuggagcgCUGCGu -3'
miRNA:   3'- gcUCUGGAGG---CUCCUGCugaa---GAUGC- -5'
8998 5' -53.6 NC_002512.2 + 223782 0.68 0.973477
Target:  5'- aGGGACCggacgucgCCGGGGACGuCggCgGCGa -3'
miRNA:   3'- gCUCUGGa-------GGCUCCUGCuGaaGaUGC- -5'
8998 5' -53.6 NC_002512.2 + 101801 0.71 0.910877
Target:  5'- gGAGcGCUUCCGAGGA-GGCUUCcuggGCGc -3'
miRNA:   3'- gCUC-UGGAGGCUCCUgCUGAAGa---UGC- -5'
8998 5' -53.6 NC_002512.2 + 167498 0.72 0.84182
Target:  5'- aCGAGGCCgugUCCGAGGGCGcCa--UGCGg -3'
miRNA:   3'- -GCUCUGG---AGGCUCCUGCuGaagAUGC- -5'
8998 5' -53.6 NC_002512.2 + 156448 0.72 0.84963
Target:  5'- gGGGGgCUCCGGGGGCGGCgggggacUCggggGCGg -3'
miRNA:   3'- gCUCUgGAGGCUCCUGCUGa------AGa---UGC- -5'
8998 5' -53.6 NC_002512.2 + 36226 0.71 0.910877
Target:  5'- gGAGACggucCCGAGGACGACg---GCGa -3'
miRNA:   3'- gCUCUGga--GGCUCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 193399 0.69 0.957995
Target:  5'- cCGAGugUUUcuucaucgaCGAGGACGACgacgaCUACGa -3'
miRNA:   3'- -GCUCugGAG---------GCUCCUGCUGaa---GAUGC- -5'
8998 5' -53.6 NC_002512.2 + 130978 0.75 0.707206
Target:  5'- gGAGACCUCgGAGGAgGAgaUCggGCGa -3'
miRNA:   3'- gCUCUGGAGgCUCCUgCUgaAGa-UGC- -5'
8998 5' -53.6 NC_002512.2 + 201864 0.75 0.716916
Target:  5'- uGGGGCCugcggUCCGAGGACGGCg---GCGg -3'
miRNA:   3'- gCUCUGG-----AGGCUCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 207873 0.74 0.773439
Target:  5'- gCGAG---UCCGGGGACGGCUUCUgGCGc -3'
miRNA:   3'- -GCUCuggAGGCUCCUGCUGAAGA-UGC- -5'
8998 5' -53.6 NC_002512.2 + 212962 0.77 0.598192
Target:  5'- aCGGcGCCUCCGGGGuCGAgaUCUGCGa -3'
miRNA:   3'- -GCUcUGGAGGCUCCuGCUgaAGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 184709 1.08 0.010111
Target:  5'- uCGAGACCUCCGAGGACGACUUCUACGc -3'
miRNA:   3'- -GCUCUGGAGGCUCCUGCUGAAGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 221862 0.76 0.677746
Target:  5'- cCGGGACCUCuCGgagcggguGGGGCGAgUUCUGCu -3'
miRNA:   3'- -GCUCUGGAG-GC--------UCCUGCUgAAGAUGc -5'
8998 5' -53.6 NC_002512.2 + 178235 0.74 0.791413
Target:  5'- aGGG-UCUCCGGGGACGGCgcggUCUcCGg -3'
miRNA:   3'- gCUCuGGAGGCUCCUGCUGa---AGAuGC- -5'
8998 5' -53.6 NC_002512.2 + 99920 0.71 0.898758
Target:  5'- gGGGGCCcgCCGaAGGGCGGCgucggCUGCu -3'
miRNA:   3'- gCUCUGGa-GGC-UCCUGCUGaa---GAUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.