miRNA display CGI


Results 41 - 60 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 3' -55.4 NC_002512.2 + 35474 0.66 0.971773
Target:  5'- gGCGACGUGUaUGACGGUcgugccguGGcGGAGc -3'
miRNA:   3'- aCGCUGCACGcGCUGCCGu-------UCuUCUC- -5'
8999 3' -55.4 NC_002512.2 + 168101 0.66 0.965912
Target:  5'- gGauACGUGCGgGAgcaGGguAGGAGAGg -3'
miRNA:   3'- aCgcUGCACGCgCUg--CCguUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 100063 0.66 0.971498
Target:  5'- cGCGACGgggGcCGCGggccggggacggaGCGGUcaggggaacaggGAGAAGGGg -3'
miRNA:   3'- aCGCUGCa--C-GCGC-------------UGCCG------------UUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 199979 0.66 0.955594
Target:  5'- cGCcGCGUccGCGCGccCGGCGGGGAcGAGc -3'
miRNA:   3'- aCGcUGCA--CGCGCu-GCCGUUCUU-CUC- -5'
8999 3' -55.4 NC_002512.2 + 210402 0.66 0.959243
Target:  5'- cGCGGUGgggaaCGCGGCGGgGAGgcGAGg -3'
miRNA:   3'- aCGCUGCac---GCGCUGCCgUUCuuCUC- -5'
8999 3' -55.4 NC_002512.2 + 154280 0.66 0.971773
Target:  5'- gUGCG-CGUGCGCaGACGcGCGcGAAa-- -3'
miRNA:   3'- -ACGCuGCACGCG-CUGC-CGUuCUUcuc -5'
8999 3' -55.4 NC_002512.2 + 80810 0.66 0.959243
Target:  5'- aGCG-CGcGCGCGccuCGGCGucggcGGAGGGGc -3'
miRNA:   3'- aCGCuGCaCGCGCu--GCCGU-----UCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 52653 0.66 0.958888
Target:  5'- gGCGACGgagcggGCGCugcugcuGGCGGUGGuGAAGAa -3'
miRNA:   3'- aCGCUGCa-----CGCG-------CUGCCGUU-CUUCUc -5'
8999 3' -55.4 NC_002512.2 + 139268 0.66 0.955594
Target:  5'- cGCGcCGcccggcGCGCGGgGGCgAAGggGGGc -3'
miRNA:   3'- aCGCuGCa-----CGCGCUgCCG-UUCuuCUC- -5'
8999 3' -55.4 NC_002512.2 + 51283 0.66 0.955594
Target:  5'- cGCGGCGaccgaGUcgGCGGCGGCcagacuGAAGAGc -3'
miRNA:   3'- aCGCUGCa----CG--CGCUGCCGuu----CUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 20133 0.66 0.955594
Target:  5'- cGCGGa--GCGCGACGGCuguccguaccGGAAGGu -3'
miRNA:   3'- aCGCUgcaCGCGCUGCCGu---------UCUUCUc -5'
8999 3' -55.4 NC_002512.2 + 10482 0.66 0.955594
Target:  5'- gGCGugG-GCGUcGCGGCGGGccGAc -3'
miRNA:   3'- aCGCugCaCGCGcUGCCGUUCuuCUc -5'
8999 3' -55.4 NC_002512.2 + 14647 0.66 0.955594
Target:  5'- gGCGGCGUaGC-UGugGGCGAGcAGGu -3'
miRNA:   3'- aCGCUGCA-CGcGCugCCGUUCuUCUc -5'
8999 3' -55.4 NC_002512.2 + 131200 0.66 0.959243
Target:  5'- cGCGuaguCGUGCGCGGCcaGGCGcucgacgucgcGGucGGAGg -3'
miRNA:   3'- aCGCu---GCACGCGCUG--CCGU-----------UCu-UCUC- -5'
8999 3' -55.4 NC_002512.2 + 133274 0.66 0.955594
Target:  5'- cGcCGACGagGCGauuGAgGGCGAGggGAu -3'
miRNA:   3'- aC-GCUGCa-CGCg--CUgCCGUUCuuCUc -5'
8999 3' -55.4 NC_002512.2 + 89672 0.67 0.934048
Target:  5'- cGCG--GUGCGaaGGCGGCGGGgcGAGa -3'
miRNA:   3'- aCGCugCACGCg-CUGCCGUUCuuCUC- -5'
8999 3' -55.4 NC_002512.2 + 14784 0.67 0.934048
Target:  5'- gGCGGuCG-GcCGCGGCGGCGAcGAAGu- -3'
miRNA:   3'- aCGCU-GCaC-GCGCUGCCGUU-CUUCuc -5'
8999 3' -55.4 NC_002512.2 + 4978 0.67 0.93834
Target:  5'- cGCGACGgagGUGaGACGGCGAacgggucGAAGGc -3'
miRNA:   3'- aCGCUGCa--CGCgCUGCCGUU-------CUUCUc -5'
8999 3' -55.4 NC_002512.2 + 145 0.67 0.951728
Target:  5'- gGCGGuCG-GCGgaggaGGCGGCAGGAGGcGg -3'
miRNA:   3'- aCGCU-GCaCGCg----CUGCCGUUCUUCuC- -5'
8999 3' -55.4 NC_002512.2 + 226574 0.67 0.943337
Target:  5'- cGCG-UGUgGCG-GAUGGCGAGGAGGc -3'
miRNA:   3'- aCGCuGCA-CGCgCUGCCGUUCUUCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.