miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
90 5' -60.4 AC_000006.1 + 14850 0.66 0.346668
Target:  5'- aUCCUCu--GC-CGUcCGCCCgCGCCCa -3'
miRNA:   3'- gAGGAGcguCGaGUA-GUGGGgGCGGG- -5'
90 5' -60.4 AC_000006.1 + 27401 0.66 0.346668
Target:  5'- aUUCUCGgGggacccagaGCUgGUCGCCCuuGCUCg -3'
miRNA:   3'- gAGGAGCgU---------CGAgUAGUGGGggCGGG- -5'
90 5' -60.4 AC_000006.1 + 30942 0.66 0.338439
Target:  5'- uCUCCUCcucaAGgaCAUCAUCCagcaccaCGCCCa -3'
miRNA:   3'- -GAGGAGcg--UCgaGUAGUGGGg------GCGGG- -5'
90 5' -60.4 AC_000006.1 + 23065 0.66 0.314609
Target:  5'- uCUUCUCGCcGCgCGU-GCCCCCcaaacgccaGCCCa -3'
miRNA:   3'- -GAGGAGCGuCGaGUAgUGGGGG---------CGGG- -5'
90 5' -60.4 AC_000006.1 + 23452 0.67 0.306952
Target:  5'- -aCUUCGCcuaccccGC-CGUCaACCuCCCGCCCa -3'
miRNA:   3'- gaGGAGCGu------CGaGUAG-UGG-GGGCGGG- -5'
90 5' -60.4 AC_000006.1 + 6255 0.67 0.306952
Target:  5'- -aCCUCGCcgcgcaggGGCUCGUUAguccagcagaguCUgCCGCCCu -3'
miRNA:   3'- gaGGAGCG--------UCGAGUAGU------------GGgGGCGGG- -5'
90 5' -60.4 AC_000006.1 + 26578 0.67 0.306952
Target:  5'- uUCCuUCGCAGuCUCcaaCGCCUgCGCCa -3'
miRNA:   3'- gAGG-AGCGUC-GAGua-GUGGGgGCGGg -5'
90 5' -60.4 AC_000006.1 + 21407 0.67 0.299439
Target:  5'- gCUCCacauaCGcCGGCUCAUCugCagggCGCCCa -3'
miRNA:   3'- -GAGGa----GC-GUCGAGUAGugGgg--GCGGG- -5'
90 5' -60.4 AC_000006.1 + 12428 0.67 0.29207
Target:  5'- -cCCUCGCcGC-CGcCACCUCCucuGCCCa -3'
miRNA:   3'- gaGGAGCGuCGaGUaGUGGGGG---CGGG- -5'
90 5' -60.4 AC_000006.1 + 22488 0.67 0.284842
Target:  5'- uCUCCUgGaaggucuGCUCGUcCACCUgCGCCUg -3'
miRNA:   3'- -GAGGAgCgu-----CGAGUA-GUGGGgGCGGG- -5'
90 5' -60.4 AC_000006.1 + 24160 0.67 0.284842
Target:  5'- -cCCUCGCgcAGCUCc-CugC-CCGCCCg -3'
miRNA:   3'- gaGGAGCG--UCGAGuaGugGgGGCGGG- -5'
90 5' -60.4 AC_000006.1 + 28541 0.67 0.270813
Target:  5'- --aUUUGCGGCaUGUaCGCCUCCGCCCu -3'
miRNA:   3'- gagGAGCGUCGaGUA-GUGGGGGCGGG- -5'
90 5' -60.4 AC_000006.1 + 13735 0.68 0.244429
Target:  5'- uUCCUgaccacgguggUGCAGaaCAacgauuUCACCCCCGCCg -3'
miRNA:   3'- gAGGA-----------GCGUCgaGU------AGUGGGGGCGGg -5'
90 5' -60.4 AC_000006.1 + 18926 0.69 0.214491
Target:  5'- aUCC-CGCGGCUCggCAgCagcaCCGCCUg -3'
miRNA:   3'- gAGGaGCGUCGAGuaGUgGg---GGCGGG- -5'
90 5' -60.4 AC_000006.1 + 29650 0.7 0.192857
Target:  5'- -gCCUUugcgGCAGUUUcgCACgCCUCGCCCg -3'
miRNA:   3'- gaGGAG----CGUCGAGuaGUG-GGGGCGGG- -5'
90 5' -60.4 AC_000006.1 + 27759 0.7 0.182773
Target:  5'- gUCCUCGCcgcccAGgUCAUCaacaaccgaGCCUCCGUCCc -3'
miRNA:   3'- gAGGAGCG-----UCgAGUAG---------UGGGGGCGGG- -5'
90 5' -60.4 AC_000006.1 + 14890 0.71 0.151072
Target:  5'- gUCCUUGUAGUugaucUCAUCgACCaCCUGCCUg -3'
miRNA:   3'- gAGGAGCGUCG-----AGUAG-UGG-GGGCGGG- -5'
90 5' -60.4 AC_000006.1 + 16581 0.72 0.13908
Target:  5'- -aCC-CGCcGC-CGUCugcCCCCCGCCCg -3'
miRNA:   3'- gaGGaGCGuCGaGUAGu--GGGGGCGGG- -5'
90 5' -60.4 AC_000006.1 + 27008 0.73 0.114424
Target:  5'- gCUCCcgCGCgGGCUCGUCAgccUCUCCGUCCu -3'
miRNA:   3'- -GAGGa-GCG-UCGAGUAGU---GGGGGCGGG- -5'
90 5' -60.4 AC_000006.1 + 25168 0.73 0.111254
Target:  5'- cCUUCUCGCGGCUCAggUACUCCgaggucgugcaGCCCg -3'
miRNA:   3'- -GAGGAGCGUCGAGUa-GUGGGGg----------CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.