miRNA display CGI


Results 1 - 20 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9000 3' -59.1 NC_002512.2 + 147487 0.65 0.899339
Target:  5'- -gGCGCUGCgGA---CGGGCGcgaccggcgcuucUCCCGu -3'
miRNA:   3'- gaCGCGAUGgCUaagGCCCGC-------------AGGGC- -5'
9000 3' -59.1 NC_002512.2 + 80420 0.66 0.893784
Target:  5'- -gGCGUgGCUG--UCgGcGGCGUCCCGg -3'
miRNA:   3'- gaCGCGaUGGCuaAGgC-CCGCAGGGC- -5'
9000 3' -59.1 NC_002512.2 + 209947 0.66 0.893784
Target:  5'- -cGUGCUGCuCGA--CCGGGCGcgggUCCUc -3'
miRNA:   3'- gaCGCGAUG-GCUaaGGCCCGC----AGGGc -5'
9000 3' -59.1 NC_002512.2 + 172822 0.66 0.893784
Target:  5'- gUGCGcCUACCGuucgCCcGGCGcCCCc -3'
miRNA:   3'- gACGC-GAUGGCuaa-GGcCCGCaGGGc -5'
9000 3' -59.1 NC_002512.2 + 211431 0.66 0.887417
Target:  5'- -cGCGCUGCCcuucugcccgGAgcUCGGGCG-CCUGc -3'
miRNA:   3'- gaCGCGAUGG----------CUaaGGCCCGCaGGGC- -5'
9000 3' -59.1 NC_002512.2 + 136549 0.66 0.887417
Target:  5'- aUGCGCacgcagcucuUGCgGAUgaUCCGGGUcagCCCGg -3'
miRNA:   3'- gACGCG----------AUGgCUA--AGGCCCGca-GGGC- -5'
9000 3' -59.1 NC_002512.2 + 15874 0.66 0.880849
Target:  5'- -cGCacCUAUCGccUCCGGGCGUCgCGc -3'
miRNA:   3'- gaCGc-GAUGGCuaAGGCCCGCAGgGC- -5'
9000 3' -59.1 NC_002512.2 + 20069 0.66 0.880849
Target:  5'- aCUGgGCcagACCGAgUCCGGucuCGUCgCCGa -3'
miRNA:   3'- -GACgCGa--UGGCUaAGGCCc--GCAG-GGC- -5'
9000 3' -59.1 NC_002512.2 + 88692 0.66 0.880849
Target:  5'- gCUGCGCUGCUGcAUgaUCCGGuaGCGggCCa -3'
miRNA:   3'- -GACGCGAUGGC-UA--AGGCC--CGCagGGc -5'
9000 3' -59.1 NC_002512.2 + 101803 0.66 0.880849
Target:  5'- -aGCGCUuCCGAggaggcUUCCuGGGCG-CCgCGa -3'
miRNA:   3'- gaCGCGAuGGCU------AAGG-CCCGCaGG-GC- -5'
9000 3' -59.1 NC_002512.2 + 115719 0.66 0.878166
Target:  5'- -gGCGCcACCGAggaggaccgggcCCGGGuCGUCCUc -3'
miRNA:   3'- gaCGCGaUGGCUaa----------GGCCC-GCAGGGc -5'
9000 3' -59.1 NC_002512.2 + 103395 0.66 0.874083
Target:  5'- -cGCGCccaacGCCGGggaUCCGGGCGaCgCGa -3'
miRNA:   3'- gaCGCGa----UGGCUa--AGGCCCGCaGgGC- -5'
9000 3' -59.1 NC_002512.2 + 70130 0.66 0.874083
Target:  5'- -aGCGUgACCGAcUCCGGGCacgaGUCUa- -3'
miRNA:   3'- gaCGCGaUGGCUaAGGCCCG----CAGGgc -5'
9000 3' -59.1 NC_002512.2 + 69781 0.66 0.874083
Target:  5'- cCUGCuCcACCG--UCUGGGCGUCCg- -3'
miRNA:   3'- -GACGcGaUGGCuaAGGCCCGCAGGgc -5'
9000 3' -59.1 NC_002512.2 + 135126 0.66 0.867124
Target:  5'- -gGCGCgacgcuCCGAgggCCGGGcCGcCCUGg -3'
miRNA:   3'- gaCGCGau----GGCUaa-GGCCC-GCaGGGC- -5'
9000 3' -59.1 NC_002512.2 + 224611 0.66 0.867124
Target:  5'- -cGCGgUGCCGA--CCGGGCucgggGUCgCCGc -3'
miRNA:   3'- gaCGCgAUGGCUaaGGCCCG-----CAG-GGC- -5'
9000 3' -59.1 NC_002512.2 + 159360 0.66 0.867124
Target:  5'- -gGCGU--CgGggUCgGGGCGUCCCa -3'
miRNA:   3'- gaCGCGauGgCuaAGgCCCGCAGGGc -5'
9000 3' -59.1 NC_002512.2 + 138051 0.66 0.867124
Target:  5'- cCUGCGggACCGGaUCCGGGUGa--CGa -3'
miRNA:   3'- -GACGCgaUGGCUaAGGCCCGCaggGC- -5'
9000 3' -59.1 NC_002512.2 + 221512 0.66 0.867124
Target:  5'- cCUGCGCggcGCCGcggaUCCucGGCGcUCCCGc -3'
miRNA:   3'- -GACGCGa--UGGCua--AGGc-CCGC-AGGGC- -5'
9000 3' -59.1 NC_002512.2 + 51055 0.66 0.867123
Target:  5'- cCUGCGac-CCGAgcacgUCCGGGCGcUgUCGg -3'
miRNA:   3'- -GACGCgauGGCUa----AGGCCCGC-AgGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.