miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9000 5' -45.7 NC_002512.2 + 75083 0.66 1
Target:  5'- gUCGA-GGCGCCGUUUCgGGggcucgACGu -3'
miRNA:   3'- gAGUUaUUGUGGCAAAGgCCaa----UGCc -5'
9000 5' -45.7 NC_002512.2 + 40223 0.66 1
Target:  5'- -cCAGUAGgGCCGacgCCGGUguCGGc -3'
miRNA:   3'- gaGUUAUUgUGGCaaaGGCCAauGCC- -5'
9000 5' -45.7 NC_002512.2 + 93837 0.66 1
Target:  5'- uCUCGGUAGCAUgGUcgaCgGGUcGCGGu -3'
miRNA:   3'- -GAGUUAUUGUGgCAaa-GgCCAaUGCC- -5'
9000 5' -45.7 NC_002512.2 + 75136 0.66 1
Target:  5'- --uGGUGGuCACCGccaCCGGggGCGGa -3'
miRNA:   3'- gagUUAUU-GUGGCaaaGGCCaaUGCC- -5'
9000 5' -45.7 NC_002512.2 + 166431 0.66 1
Target:  5'- cCUCuucccCGCCGUccUCCGGggGCGa -3'
miRNA:   3'- -GAGuuauuGUGGCAa-AGGCCaaUGCc -5'
9000 5' -45.7 NC_002512.2 + 184655 0.66 1
Target:  5'- -cCGcgGGCGCCGcgccgaaaUCCGGUcgGCGGc -3'
miRNA:   3'- gaGUuaUUGUGGCaa------AGGCCAa-UGCC- -5'
9000 5' -45.7 NC_002512.2 + 204563 0.66 1
Target:  5'- uUCAAgAACGCCc--UCCGGUgggGCGa -3'
miRNA:   3'- gAGUUaUUGUGGcaaAGGCCAa--UGCc -5'
9000 5' -45.7 NC_002512.2 + 41133 0.66 1
Target:  5'- uUCGAUGGCAacuCCGcacgggcCCGGaUACGGa -3'
miRNA:   3'- gAGUUAUUGU---GGCaaa----GGCCaAUGCC- -5'
9000 5' -45.7 NC_002512.2 + 194825 0.66 1
Target:  5'- gCUCG---GCACCGUggugcugucCCGGcccgUGCGGa -3'
miRNA:   3'- -GAGUuauUGUGGCAaa-------GGCCa---AUGCC- -5'
9000 5' -45.7 NC_002512.2 + 133305 0.66 1
Target:  5'- aUCGAaGACGCCGgcgaucUUCCuGUagaUGCGGa -3'
miRNA:   3'- gAGUUaUUGUGGCa-----AAGGcCA---AUGCC- -5'
9000 5' -45.7 NC_002512.2 + 36988 0.66 1
Target:  5'- gUCcAUGACACgGcaUCCGGUcGCGa -3'
miRNA:   3'- gAGuUAUUGUGgCaaAGGCCAaUGCc -5'
9000 5' -45.7 NC_002512.2 + 78545 0.66 1
Target:  5'- -gCAacAUGGCGCCGg--CCGGgccgcgaggGCGGa -3'
miRNA:   3'- gaGU--UAUUGUGGCaaaGGCCaa-------UGCC- -5'
9000 5' -45.7 NC_002512.2 + 92227 0.66 1
Target:  5'- -cCGAUAugGCCGc--CCGGUgacCGGu -3'
miRNA:   3'- gaGUUAUugUGGCaaaGGCCAau-GCC- -5'
9000 5' -45.7 NC_002512.2 + 219172 0.66 1
Target:  5'- uUCAGUGACgACCGUUUgUCGa-UGCGGc -3'
miRNA:   3'- gAGUUAUUG-UGGCAAA-GGCcaAUGCC- -5'
9000 5' -45.7 NC_002512.2 + 43067 0.66 1
Target:  5'- cCUCGccgaGGCACCGgucCCGGggcGCGGc -3'
miRNA:   3'- -GAGUua--UUGUGGCaaaGGCCaa-UGCC- -5'
9000 5' -45.7 NC_002512.2 + 112579 0.66 1
Target:  5'- -------cCGCCGUccgUCCGGUgguagUGCGGg -3'
miRNA:   3'- gaguuauuGUGGCAa--AGGCCA-----AUGCC- -5'
9000 5' -45.7 NC_002512.2 + 223311 0.66 1
Target:  5'- -cCGGUcGACACCGUgaacggUCGGgaggACGGg -3'
miRNA:   3'- gaGUUA-UUGUGGCAaa----GGCCaa--UGCC- -5'
9000 5' -45.7 NC_002512.2 + 20917 0.66 1
Target:  5'- -gCGAUAACACUGacagCGGUaACGGa -3'
miRNA:   3'- gaGUUAUUGUGGCaaagGCCAaUGCC- -5'
9000 5' -45.7 NC_002512.2 + 97608 0.66 1
Target:  5'- uUCAAUcAGCACCG---CUGGcgGCGGa -3'
miRNA:   3'- gAGUUA-UUGUGGCaaaGGCCaaUGCC- -5'
9000 5' -45.7 NC_002512.2 + 16516 0.67 0.999999
Target:  5'- -aCGAUAGCACUGUcgCCGccagcGCGGg -3'
miRNA:   3'- gaGUUAUUGUGGCAaaGGCcaa--UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.