miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9001 3' -53.6 NC_002512.2 + 123204 0.68 0.978564
Target:  5'- aGGAGGagCUGCCCGaggaCGUCGccgCCCa- -3'
miRNA:   3'- -CCUCUa-GAUGGGCaa--GCAGCa--GGGcu -5'
9001 3' -53.6 NC_002512.2 + 108884 0.67 0.981509
Target:  5'- cGGGGAUCgucgaacgACCCGUaCGcccucucgagcgucuUCGUCCUGu -3'
miRNA:   3'- -CCUCUAGa-------UGGGCAaGC---------------AGCAGGGCu -5'
9001 3' -53.6 NC_002512.2 + 103406 0.67 0.982673
Target:  5'- cGGGGccacgaacucGUCgaagACgCCGUcgaacgCGUCGUCCCGGu -3'
miRNA:   3'- -CCUC----------UAGa---UG-GGCAa-----GCAGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 212978 0.67 0.983962
Target:  5'- cGAGAUCUgcgaccucaucgucGCCgCGgcCGUCGggCCCGGg -3'
miRNA:   3'- cCUCUAGA--------------UGG-GCaaGCAGCa-GGGCU- -5'
9001 3' -53.6 NC_002512.2 + 40270 0.67 0.984491
Target:  5'- cGAcGAUCgcgugcggccGCCCGcgcacgaaCGUCGUCCCGAg -3'
miRNA:   3'- cCU-CUAGa---------UGGGCaa------GCAGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 126809 0.67 0.986159
Target:  5'- cGGGAUCgccuCCCGUa-GUCcGUCCCGu -3'
miRNA:   3'- cCUCUAGau--GGGCAagCAG-CAGGGCu -5'
9001 3' -53.6 NC_002512.2 + 133795 0.67 0.986159
Target:  5'- cGAGAUCUuCgCGUcCGUCGaCCUGAc -3'
miRNA:   3'- cCUCUAGAuGgGCAaGCAGCaGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 5868 0.66 0.989081
Target:  5'- cGGAGu----CCCGggCGUCGUCCg-- -3'
miRNA:   3'- -CCUCuagauGGGCaaGCAGCAGGgcu -5'
9001 3' -53.6 NC_002512.2 + 112238 0.66 0.989081
Target:  5'- cGGGAUCUGgUagcaGUUCcUCGUCUCGAg -3'
miRNA:   3'- cCUCUAGAUgGg---CAAGcAGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 208605 0.66 0.989081
Target:  5'- cGAGGUCgagguUCCGUgcuGUCGUCCCc- -3'
miRNA:   3'- cCUCUAGau---GGGCAag-CAGCAGGGcu -5'
9001 3' -53.6 NC_002512.2 + 219656 0.66 0.989856
Target:  5'- cGGAGGUUcGCCCGUcgggaucugggcgCGcCG-CCCGAg -3'
miRNA:   3'- -CCUCUAGaUGGGCAa------------GCaGCaGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 223205 0.66 0.990348
Target:  5'- cGGGGA-CggcguCCCGgagCG-CGUCCCGGc -3'
miRNA:   3'- -CCUCUaGau---GGGCaa-GCaGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 217784 0.66 0.990348
Target:  5'- cGGGGUCgcgGCCggcuggcggauCGgcgUCGcCGUCCCGAu -3'
miRNA:   3'- cCUCUAGa--UGG-----------GCa--AGCaGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 76759 0.66 0.990348
Target:  5'- -cGGAUC-GCCCGUcccgcccgUCGccaccgaaUCGUCCCGGa -3'
miRNA:   3'- ccUCUAGaUGGGCA--------AGC--------AGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 204794 0.66 0.991498
Target:  5'- aGGAGAc--GCCCGggaGguccgCGUCCCGGg -3'
miRNA:   3'- -CCUCUagaUGGGCaagCa----GCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 7012 0.66 0.991498
Target:  5'- aGGAGAgccgcagggcCUugCCGggcUCGUCGUUCgGGa -3'
miRNA:   3'- -CCUCUa---------GAugGGCa--AGCAGCAGGgCU- -5'
9001 3' -53.6 NC_002512.2 + 105933 0.66 0.991498
Target:  5'- cGGGGAggcggACUCGUUCGUCacgGUCgCGGa -3'
miRNA:   3'- -CCUCUaga--UGGGCAAGCAG---CAGgGCU- -5'
9001 3' -53.6 NC_002512.2 + 106330 0.66 0.991498
Target:  5'- cGGcGGcUCUcCCCGgUCGcUCGUCCCGc -3'
miRNA:   3'- -CC-UCuAGAuGGGCaAGC-AGCAGGGCu -5'
9001 3' -53.6 NC_002512.2 + 219277 0.66 0.992134
Target:  5'- aGGGGGcggacgccgacgcCgugGCCCGcUUCGUCGUCCgCGGc -3'
miRNA:   3'- -CCUCUa------------Ga--UGGGC-AAGCAGCAGG-GCU- -5'
9001 3' -53.6 NC_002512.2 + 135117 0.66 0.992536
Target:  5'- uGGAGAaCUACCUcuccaagGUCGUCaCCGAc -3'
miRNA:   3'- -CCUCUaGAUGGGcaag---CAGCAG-GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.