Results 61 - 70 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9001 | 3' | -53.6 | NC_002512.2 | + | 64307 | 0.66 | 0.992536 |
Target: 5'- uGGGGAgcggCUGCCCGgccaccaCGUCgCCGAc -3' miRNA: 3'- -CCUCUa---GAUGGGCaagca--GCAG-GGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 82178 | 0.66 | 0.992536 |
Target: 5'- aGGAGgGUCgagaGCCCGUccgcCGUCGggccggcguccUCCCGGg -3' miRNA: 3'- -CCUC-UAGa---UGGGCAa---GCAGC-----------AGGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 33689 | 0.66 | 0.992536 |
Target: 5'- cGGAGGcUCgccagggACCCGgcCGUCGcCCCc- -3' miRNA: 3'- -CCUCU-AGa------UGGGCaaGCAGCaGGGcu -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 213676 | 0.66 | 0.992536 |
Target: 5'- cGGAGGggaGCCCGg-CGUCG-CCCGc -3' miRNA: 3'- -CCUCUagaUGGGCaaGCAGCaGGGCu -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 216855 | 0.66 | 0.992536 |
Target: 5'- cGuGAUCUcGCCC--UCGUCGUCCgCGu -3' miRNA: 3'- cCuCUAGA-UGGGcaAGCAGCAGG-GCu -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 93106 | 0.66 | 0.992536 |
Target: 5'- uGGGcuUCUGCCUGUUCuUCGUgCUGGa -3' miRNA: 3'- -CCUcuAGAUGGGCAAGcAGCAgGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 195212 | 0.66 | 0.993471 |
Target: 5'- cGAGAUCgugUCCGaugugUCGUCGcccgcgaugUCCCGAc -3' miRNA: 3'- cCUCUAGau-GGGCa----AGCAGC---------AGGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 53088 | 0.66 | 0.994309 |
Target: 5'- aGAGAcgCccaggACCCGUUCGcgggcgagcUGUCCCGAg -3' miRNA: 3'- cCUCUa-Ga----UGGGCAAGCa--------GCAGGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 156179 | 0.66 | 0.994309 |
Target: 5'- gGGGGAgcguggCgauCCC--UgGUCGUCCCGAa -3' miRNA: 3'- -CCUCUa-----Gau-GGGcaAgCAGCAGGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 100992 | 0.66 | 0.994309 |
Target: 5'- gGGcGGAUCgccagGCCCG-UC-UCGUCCCu- -3' miRNA: 3'- -CC-UCUAGa----UGGGCaAGcAGCAGGGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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