Results 61 - 70 of 70 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 9001 | 3' | -53.6 | NC_002512.2 | + | 142246 | 0.72 | 0.880412 |
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Target: 5'- cGGGAUCUccgaucugggAUCCGgUCGUCGUCCgGGc -3' miRNA: 3'- cCUCUAGA----------UGGGCaAGCAGCAGGgCU- -5' |
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| 9001 | 3' | -53.6 | NC_002512.2 | + | 76684 | 0.72 | 0.879039 |
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Target: 5'- cGGAGAUCcGCUCGUcugaugUCGUCGgcggcgucagcgCCCGGg -3' miRNA: 3'- -CCUCUAGaUGGGCA------AGCAGCa-----------GGGCU- -5' |
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| 9001 | 3' | -53.6 | NC_002512.2 | + | 105447 | 0.73 | 0.827703 |
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Target: 5'- cGGGGuuccUCcGCaggaCGUUCGUCGUCCCGu -3' miRNA: 3'- -CCUCu---AGaUGg---GCAAGCAGCAGGGCu -5' |
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| 9001 | 3' | -53.6 | NC_002512.2 | + | 54372 | 0.73 | 0.819453 |
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Target: 5'- cGGGGUCaGCCCGggUCcaCGUCCCGAu -3' miRNA: 3'- cCUCUAGaUGGGCa-AGcaGCAGGGCU- -5' |
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| 9001 | 3' | -53.6 | NC_002512.2 | + | 54178 | 0.73 | 0.819453 |
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Target: 5'- cGGGGUCaGCCCGggUCcaCGUCCCGAu -3' miRNA: 3'- cCUCUAGaUGGGCa-AGcaGCAGGGCU- -5' |
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| 9001 | 3' | -53.6 | NC_002512.2 | + | 185319 | 0.74 | 0.802483 |
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Target: 5'- cGAGGagCUGCCCGUcugCGUCGccgCCCGGg -3' miRNA: 3'- cCUCUa-GAUGGGCAa--GCAGCa--GGGCU- -5' |
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| 9001 | 3' | -53.6 | NC_002512.2 | + | 190664 | 0.75 | 0.718922 |
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Target: 5'- --cGAUCUGCCCGUUCacucuccGUUGUCuCCGAu -3' miRNA: 3'- ccuCUAGAUGGGCAAG-------CAGCAG-GGCU- -5' |
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| 9001 | 3' | -53.6 | NC_002512.2 | + | 220795 | 0.79 | 0.543132 |
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Target: 5'- uGGGGAUCguccucgACCCGcUCGUgGUCCCGc -3' miRNA: 3'- -CCUCUAGa------UGGGCaAGCAgCAGGGCu -5' |
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| 9001 | 3' | -53.6 | NC_002512.2 | + | 182789 | 0.87 | 0.20777 |
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Target: 5'- cGGAGcGUCUGCgCGUUCGUCaGUCCCGAg -3' miRNA: 3'- -CCUC-UAGAUGgGCAAGCAG-CAGGGCU- -5' |
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| 9001 | 3' | -53.6 | NC_002512.2 | + | 183662 | 1.12 | 0.006269 |
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Target: 5'- cGGAGAUCUACCCGUUCGUCGUCCCGAa -3' miRNA: 3'- -CCUCUAGAUGGGCAAGCAGCAGGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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