miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9001 3' -53.6 NC_002512.2 + 145846 0.68 0.973516
Target:  5'- cGAGAUCUucaacgagcaccuGCCCGUcuucaacuUCGUCGgcgaCCUGGa -3'
miRNA:   3'- cCUCUAGA-------------UGGGCA--------AGCAGCa---GGGCU- -5'
9001 3' -53.6 NC_002512.2 + 155003 0.68 0.976257
Target:  5'- cGAGG---AUCCGUcgccCGUCGUCCCGGg -3'
miRNA:   3'- cCUCUagaUGGGCAa---GCAGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 155200 0.69 0.954829
Target:  5'- cGAGAUCcgaCCGUUCGUCGaagggaaCCGAa -3'
miRNA:   3'- cCUCUAGaugGGCAAGCAGCag-----GGCU- -5'
9001 3' -53.6 NC_002512.2 + 156179 0.66 0.994309
Target:  5'- gGGGGAgcguggCgauCCC--UgGUCGUCCCGAa -3'
miRNA:   3'- -CCUCUa-----Gau-GGGcaAgCAGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 175998 0.68 0.978564
Target:  5'- cGAGAUCUcCUCGUcCGUCugGUCCCu- -3'
miRNA:   3'- cCUCUAGAuGGGCAaGCAG--CAGGGcu -5'
9001 3' -53.6 NC_002512.2 + 182789 0.87 0.20777
Target:  5'- cGGAGcGUCUGCgCGUUCGUCaGUCCCGAg -3'
miRNA:   3'- -CCUC-UAGAUGgGCAAGCAG-CAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 183662 1.12 0.006269
Target:  5'- cGGAGAUCUACCCGUUCGUCGUCCCGAa -3'
miRNA:   3'- -CCUCUAGAUGGGCAAGCAGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 184753 0.71 0.911973
Target:  5'- -aGGAUCggcgggcgGCCCGUggUCGUCGacCCCGAg -3'
miRNA:   3'- ccUCUAGa-------UGGGCA--AGCAGCa-GGGCU- -5'
9001 3' -53.6 NC_002512.2 + 185319 0.74 0.802483
Target:  5'- cGAGGagCUGCCCGUcugCGUCGccgCCCGGg -3'
miRNA:   3'- cCUCUa-GAUGGGCAa--GCAGCa--GGGCU- -5'
9001 3' -53.6 NC_002512.2 + 190158 0.69 0.965201
Target:  5'- gGGuGGGUCUucaCCG-UCGUCGaCCCGAu -3'
miRNA:   3'- -CC-UCUAGAug-GGCaAGCAGCaGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 190664 0.75 0.718922
Target:  5'- --cGAUCUGCCCGUUCacucuccGUUGUCuCCGAu -3'
miRNA:   3'- ccuCUAGAUGGGCAAG-------CAGCAG-GGCU- -5'
9001 3' -53.6 NC_002512.2 + 193678 0.69 0.950951
Target:  5'- aGGAGggCU-CCCGca-GUCGgUCCCGGg -3'
miRNA:   3'- -CCUCuaGAuGGGCaagCAGC-AGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 195212 0.66 0.993471
Target:  5'- cGAGAUCgugUCCGaugugUCGUCGcccgcgaugUCCCGAc -3'
miRNA:   3'- cCUCUAGau-GGGCa----AGCAGC---------AGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 204794 0.66 0.991498
Target:  5'- aGGAGAc--GCCCGggaGguccgCGUCCCGGg -3'
miRNA:   3'- -CCUCUagaUGGGCaagCa----GCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 208605 0.66 0.989081
Target:  5'- cGAGGUCgagguUCCGUgcuGUCGUCCCc- -3'
miRNA:   3'- cCUCUAGau---GGGCAag-CAGCAGGGcu -5'
9001 3' -53.6 NC_002512.2 + 209357 0.68 0.973774
Target:  5'- cGAGGUCggcgACCUGgcgacCGUgUGUCCCGAc -3'
miRNA:   3'- cCUCUAGa---UGGGCaa---GCA-GCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 210447 0.71 0.893684
Target:  5'- cGGGGA-CUggACCCGUggaugCGUCCCGAu -3'
miRNA:   3'- -CCUCUaGA--UGGGCAagca-GCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 210574 0.68 0.968252
Target:  5'- uGGAGAugacguggUCgACCCGUUCGUCcggagGUCCUc- -3'
miRNA:   3'- -CCUCU--------AGaUGGGCAAGCAG-----CAGGGcu -5'
9001 3' -53.6 NC_002512.2 + 212978 0.67 0.983962
Target:  5'- cGAGAUCUgcgaccucaucgucGCCgCGgcCGUCGggCCCGGg -3'
miRNA:   3'- cCUCUAGA--------------UGG-GCaaGCAGCa-GGGCU- -5'
9001 3' -53.6 NC_002512.2 + 213676 0.66 0.992536
Target:  5'- cGGAGGggaGCCCGg-CGUCG-CCCGc -3'
miRNA:   3'- -CCUCUagaUGGGCaaGCAGCaGGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.