Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9001 | 3' | -53.6 | NC_002512.2 | + | 118660 | 0.69 | 0.954829 |
Target: 5'- cGGGcgCccggccGCCCGUcaUCGUCuGUCCCGAc -3' miRNA: 3'- cCUCuaGa-----UGGGCA--AGCAG-CAGGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 112238 | 0.66 | 0.989081 |
Target: 5'- cGGGAUCUGgUagcaGUUCcUCGUCUCGAg -3' miRNA: 3'- cCUCUAGAUgGg---CAAGcAGCAGGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 108936 | 0.68 | 0.976257 |
Target: 5'- --uGAUCUGCCUGgcggUGUCGUUCCu- -3' miRNA: 3'- ccuCUAGAUGGGCaa--GCAGCAGGGcu -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 108884 | 0.67 | 0.981509 |
Target: 5'- cGGGGAUCgucgaacgACCCGUaCGcccucucgagcgucuUCGUCCUGu -3' miRNA: 3'- -CCUCUAGa-------UGGGCAaGC---------------AGCAGGGCu -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 106330 | 0.66 | 0.991498 |
Target: 5'- cGGcGGcUCUcCCCGgUCGcUCGUCCCGc -3' miRNA: 3'- -CC-UCuAGAuGGGCaAGC-AGCAGGGCu -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 105933 | 0.66 | 0.991498 |
Target: 5'- cGGGGAggcggACUCGUUCGUCacgGUCgCGGa -3' miRNA: 3'- -CCUCUaga--UGGGCAAGCAG---CAGgGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 105447 | 0.73 | 0.827703 |
Target: 5'- cGGGGuuccUCcGCaggaCGUUCGUCGUCCCGu -3' miRNA: 3'- -CCUCu---AGaUGg---GCAAGCAGCAGGGCu -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 103406 | 0.67 | 0.982673 |
Target: 5'- cGGGGccacgaacucGUCgaagACgCCGUcgaacgCGUCGUCCCGGu -3' miRNA: 3'- -CCUC----------UAGa---UG-GGCAa-----GCAGCAGGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 100992 | 0.66 | 0.994309 |
Target: 5'- gGGcGGAUCgccagGCCCG-UC-UCGUCCCu- -3' miRNA: 3'- -CC-UCUAGa----UGGGCaAGcAGCAGGGcu -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 93106 | 0.66 | 0.992536 |
Target: 5'- uGGGcuUCUGCCUGUUCuUCGUgCUGGa -3' miRNA: 3'- -CCUcuAGAUGGGCAAGcAGCAgGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 89132 | 0.72 | 0.880412 |
Target: 5'- uGGAGGgcgUCUACCCGUggGUCaacGUCuCCGGg -3' miRNA: 3'- -CCUCU---AGAUGGGCAagCAG---CAG-GGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 88147 | 0.69 | 0.958494 |
Target: 5'- gGGAcGAUCcGCCCGUggcCGUCGUgCgGGa -3' miRNA: 3'- -CCU-CUAGaUGGGCAa--GCAGCAgGgCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 82178 | 0.66 | 0.992536 |
Target: 5'- aGGAGgGUCgagaGCCCGUccgcCGUCGggccggcguccUCCCGGg -3' miRNA: 3'- -CCUC-UAGa---UGGGCAa---GCAGC-----------AGGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 76759 | 0.66 | 0.990348 |
Target: 5'- -cGGAUC-GCCCGUcccgcccgUCGccaccgaaUCGUCCCGGa -3' miRNA: 3'- ccUCUAGaUGGGCA--------AGC--------AGCAGGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 76684 | 0.72 | 0.879039 |
Target: 5'- cGGAGAUCcGCUCGUcugaugUCGUCGgcggcgucagcgCCCGGg -3' miRNA: 3'- -CCUCUAGaUGGGCA------AGCAGCa-----------GGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 64307 | 0.66 | 0.992536 |
Target: 5'- uGGGGAgcggCUGCCCGgccaccaCGUCgCCGAc -3' miRNA: 3'- -CCUCUa---GAUGGGCaagca--GCAG-GGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 54372 | 0.73 | 0.819453 |
Target: 5'- cGGGGUCaGCCCGggUCcaCGUCCCGAu -3' miRNA: 3'- cCUCUAGaUGGGCa-AGcaGCAGGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 54178 | 0.73 | 0.819453 |
Target: 5'- cGGGGUCaGCCCGggUCcaCGUCCCGAu -3' miRNA: 3'- cCUCUAGaUGGGCa-AGcaGCAGGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 53088 | 0.66 | 0.994309 |
Target: 5'- aGAGAcgCccaggACCCGUUCGcgggcgagcUGUCCCGAg -3' miRNA: 3'- cCUCUa-Ga----UGGGCAAGCa--------GCAGGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 50575 | 0.69 | 0.958494 |
Target: 5'- -aGGAUCUGCCCGccUCGcCG-CCCGc -3' miRNA: 3'- ccUCUAGAUGGGCa-AGCaGCaGGGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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