miRNA display CGI

Results 61 - 70 of 70 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
9001	3'	-53.6	NC_002512.2	+	46185	0.7	0.923059
	Target:  5'- cGGAGGUCUcCCCG-UCGagGUCCagguaGAg -3' miRNA:   3'- -CCUCUAGAuGGGCaAGCagCAGGg----CU- -5'
9001	3'	-53.6	NC_002512.2	+	40270	0.67	0.984491
	Target:  5'- cGAcGAUCgcgugcggccGCCCGcgcacgaaCGUCGUCCCGAg -3' miRNA:   3'- cCU-CUAGa---------UGGGCaa------GCAGCAGGGCU- -5'
9001	3'	-53.6	NC_002512.2	+	33689	0.66	0.992536
	Target:  5'- cGGAGGcUCgccagggACCCGgcCGUCGcCCCc- -3' miRNA:   3'- -CCUCU-AGa------UGGGCaaGCAGCaGGGcu -5'
9001	3'	-53.6	NC_002512.2	+	25233	0.68	0.968252
	Target:  5'- cGGcGAUCc-CCCGcgcgUCGcCGUCCCGGu -3' miRNA:   3'- -CCuCUAGauGGGCa---AGCaGCAGGGCU- -5'
9001	3'	-53.6	NC_002512.2	+	24637	0.69	0.950951
	Target:  5'- aGGAGAUCgGCgggaagaCGacgUCGUcCGUCCCGAu -3' miRNA:   3'- -CCUCUAGaUGg------GCa--AGCA-GCAGGGCU- -5'
9001	3'	-53.6	NC_002512.2	+	7012	0.66	0.991498
	Target:  5'- aGGAGAgccgcagggcCUugCCGggcUCGUCGUUCgGGa -3' miRNA:   3'- -CCUCUa---------GAugGGCa--AGCAGCAGGgCU- -5'
9001	3'	-53.6	NC_002512.2	+	5868	0.66	0.989081
	Target:  5'- cGGAGu----CCCGggCGUCGUCCg-- -3' miRNA:   3'- -CCUCuagauGGGCaaGCAGCAGGgcu -5'
9001	3'	-53.6	NC_002512.2	+	5826	0.68	0.968252
	Target:  5'- aGAGGUCgcagacGCCCGacgaGUCGUCCCc- -3' miRNA:   3'- cCUCUAGa-----UGGGCaag-CAGCAGGGcu -5'
9001	3'	-53.6	NC_002512.2	+	3776	0.69	0.958494
	Target:  5'- aGGAGAcggACCCGgagUCGgaccggagcaGUCCCGAg -3' miRNA:   3'- -CCUCUagaUGGGCa--AGCag--------CAGGGCU- -5'
9001	3'	-53.6	NC_002512.2	+	3703	0.68	0.978564
	Target:  5'- cGGAGGUCgACCCGgUCGcUC--CCCGGg -3' miRNA:   3'- -CCUCUAGaUGGGCaAGC-AGcaGGGCU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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