Results 61 - 70 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9001 | 3' | -53.6 | NC_002512.2 | + | 208605 | 0.66 | 0.989081 |
Target: 5'- cGAGGUCgagguUCCGUgcuGUCGUCCCc- -3' miRNA: 3'- cCUCUAGau---GGGCAag-CAGCAGGGcu -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 108936 | 0.68 | 0.976257 |
Target: 5'- --uGAUCUGCCUGgcggUGUCGUUCCu- -3' miRNA: 3'- ccuCUAGAUGGGCaa--GCAGCAGGGcu -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 155003 | 0.68 | 0.976257 |
Target: 5'- cGAGG---AUCCGUcgccCGUCGUCCCGGg -3' miRNA: 3'- cCUCUagaUGGGCAa---GCAGCAGGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 175998 | 0.68 | 0.978564 |
Target: 5'- cGAGAUCUcCUCGUcCGUCugGUCCCu- -3' miRNA: 3'- cCUCUAGAuGGGCAaGCAG--CAGGGcu -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 108884 | 0.67 | 0.981509 |
Target: 5'- cGGGGAUCgucgaacgACCCGUaCGcccucucgagcgucuUCGUCCUGu -3' miRNA: 3'- -CCUCUAGa-------UGGGCAaGC---------------AGCAGGGCu -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 103406 | 0.67 | 0.982673 |
Target: 5'- cGGGGccacgaacucGUCgaagACgCCGUcgaacgCGUCGUCCCGGu -3' miRNA: 3'- -CCUC----------UAGa---UG-GGCAa-----GCAGCAGGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 212978 | 0.67 | 0.983962 |
Target: 5'- cGAGAUCUgcgaccucaucgucGCCgCGgcCGUCGggCCCGGg -3' miRNA: 3'- cCUCUAGA--------------UGG-GCaaGCAGCa-GGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 126809 | 0.67 | 0.986159 |
Target: 5'- cGGGAUCgccuCCCGUa-GUCcGUCCCGu -3' miRNA: 3'- cCUCUAGau--GGGCAagCAG-CAGGGCu -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 133795 | 0.67 | 0.986159 |
Target: 5'- cGAGAUCUuCgCGUcCGUCGaCCUGAc -3' miRNA: 3'- cCUCUAGAuGgGCAaGCAGCaGGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 195212 | 0.66 | 0.993471 |
Target: 5'- cGAGAUCgugUCCGaugugUCGUCGcccgcgaugUCCCGAc -3' miRNA: 3'- cCUCUAGau-GGGCa----AGCAGC---------AGGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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