Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9001 | 3' | -53.6 | NC_002512.2 | + | 64307 | 0.66 | 0.992536 |
Target: 5'- uGGGGAgcggCUGCCCGgccaccaCGUCgCCGAc -3' miRNA: 3'- -CCUCUa---GAUGGGCaagca--GCAG-GGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 82178 | 0.66 | 0.992536 |
Target: 5'- aGGAGgGUCgagaGCCCGUccgcCGUCGggccggcguccUCCCGGg -3' miRNA: 3'- -CCUC-UAGa---UGGGCAa---GCAGC-----------AGGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 24637 | 0.69 | 0.950951 |
Target: 5'- aGGAGAUCgGCgggaagaCGacgUCGUcCGUCCCGAu -3' miRNA: 3'- -CCUCUAGaUGg------GCa--AGCA-GCAGGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 46185 | 0.7 | 0.923059 |
Target: 5'- cGGAGGUCUcCCCG-UCGagGUCCagguaGAg -3' miRNA: 3'- -CCUCUAGAuGGGCaAGCagCAGGg----CU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 105933 | 0.66 | 0.991498 |
Target: 5'- cGGGGAggcggACUCGUUCGUCacgGUCgCGGa -3' miRNA: 3'- -CCUCUaga--UGGGCAAGCAG---CAGgGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 125951 | 0.71 | 0.917628 |
Target: 5'- gGGGGAUCgACUCGUU-GUaGUCCCGGu -3' miRNA: 3'- -CCUCUAGaUGGGCAAgCAgCAGGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 53088 | 0.66 | 0.994309 |
Target: 5'- aGAGAcgCccaggACCCGUUCGcgggcgagcUGUCCCGAg -3' miRNA: 3'- cCUCUa-Ga----UGGGCAAGCa--------GCAGGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 89132 | 0.72 | 0.880412 |
Target: 5'- uGGAGGgcgUCUACCCGUggGUCaacGUCuCCGGg -3' miRNA: 3'- -CCUCU---AGAUGGGCAagCAG---CAG-GGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 100992 | 0.66 | 0.994309 |
Target: 5'- gGGcGGAUCgccagGCCCG-UC-UCGUCCCu- -3' miRNA: 3'- -CC-UCUAGa----UGGGCaAGcAGCAGGGcu -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 155200 | 0.69 | 0.954829 |
Target: 5'- cGAGAUCcgaCCGUUCGUCGaagggaaCCGAa -3' miRNA: 3'- cCUCUAGaugGGCAAGCAGCag-----GGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 50575 | 0.69 | 0.958494 |
Target: 5'- -aGGAUCUGCCCGccUCGcCG-CCCGc -3' miRNA: 3'- ccUCUAGAUGGGCa-AGCaGCaGGGCu -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 3776 | 0.69 | 0.958494 |
Target: 5'- aGGAGAcggACCCGgagUCGgaccggagcaGUCCCGAg -3' miRNA: 3'- -CCUCUagaUGGGCa--AGCag--------CAGGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 7012 | 0.66 | 0.991498 |
Target: 5'- aGGAGAgccgcagggcCUugCCGggcUCGUCGUUCgGGa -3' miRNA: 3'- -CCUCUa---------GAugGGCa--AGCAGCAGGgCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 76759 | 0.66 | 0.990348 |
Target: 5'- -cGGAUC-GCCCGUcccgcccgUCGccaccgaaUCGUCCCGGa -3' miRNA: 3'- ccUCUAGaUGGGCA--------AGC--------AGCAGGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 106330 | 0.66 | 0.991498 |
Target: 5'- cGGcGGcUCUcCCCGgUCGcUCGUCCCGc -3' miRNA: 3'- -CC-UCuAGAuGGGCaAGC-AGCAGGGCu -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 135117 | 0.66 | 0.992536 |
Target: 5'- uGGAGAaCUACCUcuccaagGUCGUCaCCGAc -3' miRNA: 3'- -CCUCUaGAUGGGcaag---CAGCAG-GGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 33689 | 0.66 | 0.992536 |
Target: 5'- cGGAGGcUCgccagggACCCGgcCGUCGcCCCc- -3' miRNA: 3'- -CCUCU-AGa------UGGGCaaGCAGCaGGGcu -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 25233 | 0.68 | 0.968252 |
Target: 5'- cGGcGAUCc-CCCGcgcgUCGcCGUCCCGGu -3' miRNA: 3'- -CCuCUAGauGGGCa---AGCaGCAGGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 5826 | 0.68 | 0.968252 |
Target: 5'- aGAGGUCgcagacGCCCGacgaGUCGUCCCc- -3' miRNA: 3'- cCUCUAGa-----UGGGCaag-CAGCAGGGcu -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 131351 | 0.69 | 0.958494 |
Target: 5'- aGGAGAUCccgCUGUgcaUCGUCGUcacCCCGAu -3' miRNA: 3'- -CCUCUAGaugGGCA---AGCAGCA---GGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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