Results 61 - 70 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9001 | 3' | -53.6 | NC_002512.2 | + | 33689 | 0.66 | 0.992536 |
Target: 5'- cGGAGGcUCgccagggACCCGgcCGUCGcCCCc- -3' miRNA: 3'- -CCUCU-AGa------UGGGCaaGCAGCaGGGcu -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 135117 | 0.66 | 0.992536 |
Target: 5'- uGGAGAaCUACCUcuccaagGUCGUCaCCGAc -3' miRNA: 3'- -CCUCUaGAUGGGcaag---CAGCAG-GGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 106330 | 0.66 | 0.991498 |
Target: 5'- cGGcGGcUCUcCCCGgUCGcUCGUCCCGc -3' miRNA: 3'- -CC-UCuAGAuGGGCaAGC-AGCAGGGCu -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 105933 | 0.66 | 0.991498 |
Target: 5'- cGGGGAggcggACUCGUUCGUCacgGUCgCGGa -3' miRNA: 3'- -CCUCUaga--UGGGCAAGCAG---CAGgGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 7012 | 0.66 | 0.991498 |
Target: 5'- aGGAGAgccgcagggcCUugCCGggcUCGUCGUUCgGGa -3' miRNA: 3'- -CCUCUa---------GAugGGCa--AGCAGCAGGgCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 76759 | 0.66 | 0.990348 |
Target: 5'- -cGGAUC-GCCCGUcccgcccgUCGccaccgaaUCGUCCCGGa -3' miRNA: 3'- ccUCUAGaUGGGCA--------AGC--------AGCAGGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 5868 | 0.66 | 0.989081 |
Target: 5'- cGGAGu----CCCGggCGUCGUCCg-- -3' miRNA: 3'- -CCUCuagauGGGCaaGCAGCAGGgcu -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 40270 | 0.67 | 0.984491 |
Target: 5'- cGAcGAUCgcgugcggccGCCCGcgcacgaaCGUCGUCCCGAg -3' miRNA: 3'- cCU-CUAGa---------UGGGCaa------GCAGCAGGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 3703 | 0.68 | 0.978564 |
Target: 5'- cGGAGGUCgACCCGgUCGcUC--CCCGGg -3' miRNA: 3'- -CCUCUAGaUGGGCaAGC-AGcaGGGCU- -5' |
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9001 | 3' | -53.6 | NC_002512.2 | + | 190664 | 0.75 | 0.718922 |
Target: 5'- --cGAUCUGCCCGUUCacucuccGUUGUCuCCGAu -3' miRNA: 3'- ccuCUAGAUGGGCAAG-------CAGCAG-GGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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