miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9001 5' -59.8 NC_002512.2 + 155357 0.66 0.815122
Target:  5'- cGCCUGGcuguACCUCGuCaGGcGGGACCg- -3'
miRNA:   3'- aUGGACC----UGGAGCuGcCC-CUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 195587 0.66 0.815122
Target:  5'- gACCgaggGGAacgccagucaCUCGGCGGGGcGGCCa- -3'
miRNA:   3'- aUGGa---CCUg---------GAGCUGCCCCuCUGGag -5'
9001 5' -59.8 NC_002512.2 + 115876 0.66 0.84691
Target:  5'- gUGCCgcugcgGGGCCgaCGGCGGcGGGACCa- -3'
miRNA:   3'- -AUGGa-----CCUGGa-GCUGCCcCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 147608 0.66 0.831344
Target:  5'- cGCCUcGACCcgacccUCGACGGGGGcGACgaCg -3'
miRNA:   3'- aUGGAcCUGG------AGCUGCCCCU-CUGgaG- -5'
9001 5' -59.8 NC_002512.2 + 123907 0.67 0.780929
Target:  5'- cACCU--ACCUCGACGGccaGGaAGACCUg -3'
miRNA:   3'- aUGGAccUGGAGCUGCC---CC-UCUGGAg -5'
9001 5' -59.8 NC_002512.2 + 224029 0.67 0.772059
Target:  5'- cGCCcgGGACUcCGACGGGGccGCCg- -3'
miRNA:   3'- aUGGa-CCUGGaGCUGCCCCucUGGag -5'
9001 5' -59.8 NC_002512.2 + 226191 0.67 0.797442
Target:  5'- gACCgggucGACCUCcgucgggGACGGGaGGACCUCc -3'
miRNA:   3'- aUGGac---CUGGAG-------CUGCCCcUCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 142350 0.67 0.798298
Target:  5'- -uCCUGGACCUCa--GGGucGACCUg -3'
miRNA:   3'- auGGACCUGGAGcugCCCcuCUGGAg -5'
9001 5' -59.8 NC_002512.2 + 215132 0.67 0.806782
Target:  5'- gGCCgGGGuCCgcgCGACgGGGGAGGCgaCg -3'
miRNA:   3'- aUGGaCCU-GGa--GCUG-CCCCUCUGgaG- -5'
9001 5' -59.8 NC_002512.2 + 83008 0.67 0.806782
Target:  5'- cGCCUGGGCCUCcgGGCGGuaGuGGCCcCg -3'
miRNA:   3'- aUGGACCUGGAG--CUGCCc-CuCUGGaG- -5'
9001 5' -59.8 NC_002512.2 + 123733 0.67 0.780929
Target:  5'- gUGCUcGGACCU--GCGGGGucGGACCUg -3'
miRNA:   3'- -AUGGaCCUGGAgcUGCCCC--UCUGGAg -5'
9001 5' -59.8 NC_002512.2 + 43653 0.67 0.806782
Target:  5'- gACCgGGACCUCGcccuCGGuGGcGGCCg- -3'
miRNA:   3'- aUGGaCCUGGAGCu---GCC-CCuCUGGag -5'
9001 5' -59.8 NC_002512.2 + 55033 0.67 0.789678
Target:  5'- aGCCggucGGGCCgccuacCGACGGGaGAGACgaUCg -3'
miRNA:   3'- aUGGa---CCUGGa-----GCUGCCC-CUCUGg-AG- -5'
9001 5' -59.8 NC_002512.2 + 72533 0.67 0.763076
Target:  5'- gGCCcGGACCUCGGCGGccAGGCg-- -3'
miRNA:   3'- aUGGaCCUGGAGCUGCCccUCUGgag -5'
9001 5' -59.8 NC_002512.2 + 80820 0.67 0.763076
Target:  5'- cGCCUcGGCgUCGGCGGaGGGGccccguaggcgaGCCUCg -3'
miRNA:   3'- aUGGAcCUGgAGCUGCC-CCUC------------UGGAG- -5'
9001 5' -59.8 NC_002512.2 + 86516 0.67 0.789678
Target:  5'- aGCCgu--CCUUGAgCGGGGAGGCCcCa -3'
miRNA:   3'- aUGGaccuGGAGCU-GCCCCUCUGGaG- -5'
9001 5' -59.8 NC_002512.2 + 31773 0.67 0.768479
Target:  5'- aACCUcaaggGGGCCaaacccuacucggCGACGGGGAGACg-- -3'
miRNA:   3'- aUGGA-----CCUGGa------------GCUGCCCCUCUGgag -5'
9001 5' -59.8 NC_002512.2 + 133585 0.68 0.735528
Target:  5'- cGCCggGGACC-CGAgCGGGccGGCCUCc -3'
miRNA:   3'- aUGGa-CCUGGaGCU-GCCCcuCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 135148 0.68 0.744803
Target:  5'- cGCCUGcGACCg-GGCGGGGuucGCCUg -3'
miRNA:   3'- aUGGAC-CUGGagCUGCCCCuc-UGGAg -5'
9001 5' -59.8 NC_002512.2 + 128380 0.68 0.735528
Target:  5'- -cCCUGuGCUaCGACGGGGAGAgcgaCUCg -3'
miRNA:   3'- auGGACcUGGaGCUGCCCCUCUg---GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.