miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9001 5' -59.8 NC_002512.2 + 224029 0.67 0.772059
Target:  5'- cGCCcgGGACUcCGACGGGGccGCCg- -3'
miRNA:   3'- aUGGa-CCUGGaGCUGCCCCucUGGag -5'
9001 5' -59.8 NC_002512.2 + 226191 0.67 0.797442
Target:  5'- gACCgggucGACCUCcgucgggGACGGGaGGACCUCc -3'
miRNA:   3'- aUGGac---CUGGAG-------CUGCCCcUCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 215132 0.67 0.806782
Target:  5'- gGCCgGGGuCCgcgCGACgGGGGAGGCgaCg -3'
miRNA:   3'- aUGGaCCU-GGa--GCUG-CCCCUCUGgaG- -5'
9001 5' -59.8 NC_002512.2 + 43653 0.67 0.806782
Target:  5'- gACCgGGACCUCGcccuCGGuGGcGGCCg- -3'
miRNA:   3'- aUGGaCCUGGAGCu---GCC-CCuCUGGag -5'
9001 5' -59.8 NC_002512.2 + 55033 0.67 0.789678
Target:  5'- aGCCggucGGGCCgccuacCGACGGGaGAGACgaUCg -3'
miRNA:   3'- aUGGa---CCUGGa-----GCUGCCC-CUCUGg-AG- -5'
9001 5' -59.8 NC_002512.2 + 86516 0.67 0.789678
Target:  5'- aGCCgu--CCUUGAgCGGGGAGGCCcCa -3'
miRNA:   3'- aUGGaccuGGAGCU-GCCCCUCUGGaG- -5'
9001 5' -59.8 NC_002512.2 + 83008 0.67 0.806782
Target:  5'- cGCCUGGGCCUCcgGGCGGuaGuGGCCcCg -3'
miRNA:   3'- aUGGACCUGGAG--CUGCCc-CuCUGGaG- -5'
9001 5' -59.8 NC_002512.2 + 123733 0.67 0.780929
Target:  5'- gUGCUcGGACCU--GCGGGGucGGACCUg -3'
miRNA:   3'- -AUGGaCCUGGAgcUGCCCC--UCUGGAg -5'
9001 5' -59.8 NC_002512.2 + 31773 0.67 0.768479
Target:  5'- aACCUcaaggGGGCCaaacccuacucggCGACGGGGAGACg-- -3'
miRNA:   3'- aUGGA-----CCUGGa------------GCUGCCCCUCUGgag -5'
9001 5' -59.8 NC_002512.2 + 80820 0.67 0.763076
Target:  5'- cGCCUcGGCgUCGGCGGaGGGGccccguaggcgaGCCUCg -3'
miRNA:   3'- aUGGAcCUGgAGCUGCC-CCUC------------UGGAG- -5'
9001 5' -59.8 NC_002512.2 + 188379 0.66 0.854431
Target:  5'- uUGCCgcacgGGAga-UGGCGGGGAG-CCUCa -3'
miRNA:   3'- -AUGGa----CCUggaGCUGCCCCUCuGGAG- -5'
9001 5' -59.8 NC_002512.2 + 74295 0.66 0.854431
Target:  5'- -cCCgUGGuCCUCGACGGaGGAcagGACgUCc -3'
miRNA:   3'- auGG-ACCuGGAGCUGCC-CCU---CUGgAG- -5'
9001 5' -59.8 NC_002512.2 + 115876 0.66 0.84691
Target:  5'- gUGCCgcugcgGGGCCgaCGGCGGcGGGACCa- -3'
miRNA:   3'- -AUGGa-----CCUGGa-GCUGCCcCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 75480 0.66 0.831344
Target:  5'- uUGCCUcGGACCccgaucgccucCGACGGGGgcgGGACUUUc -3'
miRNA:   3'- -AUGGA-CCUGGa----------GCUGCCCC---UCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 13435 0.66 0.854431
Target:  5'- cUACCUGGGCuuCUCGAUGGaGAGGgCg- -3'
miRNA:   3'- -AUGGACCUG--GAGCUGCCcCUCUgGag -5'
9001 5' -59.8 NC_002512.2 + 120787 0.66 0.853686
Target:  5'- aGCCUGGcGCUgacggccacggugUCGACGGaccuggcgcgcGGGGACCUg -3'
miRNA:   3'- aUGGACC-UGG-------------AGCUGCC-----------CCUCUGGAg -5'
9001 5' -59.8 NC_002512.2 + 195587 0.66 0.815122
Target:  5'- gACCgaggGGAacgccagucaCUCGGCGGGGcGGCCa- -3'
miRNA:   3'- aUGGa---CCUg---------GAGCUGCCCCuCUGGag -5'
9001 5' -59.8 NC_002512.2 + 53147 0.66 0.831344
Target:  5'- gACCcugaaGGACCU-GACGGcGGAGAUCa- -3'
miRNA:   3'- aUGGa----CCUGGAgCUGCC-CCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 149415 0.66 0.823312
Target:  5'- gGCCgcgaggGGACCgCGGCGGGGgcGGGCg-- -3'
miRNA:   3'- aUGGa-----CCUGGaGCUGCCCC--UCUGgag -5'
9001 5' -59.8 NC_002512.2 + 155357 0.66 0.815122
Target:  5'- cGCCUGGcuguACCUCGuCaGGcGGGACCg- -3'
miRNA:   3'- aUGGACC----UGGAGCuGcCC-CUCUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.