miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9001 5' -59.8 NC_002512.2 + 160653 0.71 0.53354
Target:  5'- -cCCUGGAUCgaccgcggCGACGGGGAuucggggggGACUUCg -3'
miRNA:   3'- auGGACCUGGa-------GCUGCCCCU---------CUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 159951 0.72 0.496374
Target:  5'- gGCC-GGACCggaGACcuaccGGGAGACCUCg -3'
miRNA:   3'- aUGGaCCUGGag-CUGc----CCCUCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 158918 0.7 0.609403
Target:  5'- gGCCgaguacGGCUUCGGCGGGGGcgccggcGGCCUCu -3'
miRNA:   3'- aUGGac----CUGGAGCUGCCCCU-------CUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 155357 0.66 0.815122
Target:  5'- cGCCUGGcuguACCUCGuCaGGcGGGACCg- -3'
miRNA:   3'- aUGGACC----UGGAGCuGcCC-CUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 152673 0.66 0.815122
Target:  5'- cGCCUcccGGuCgCUCGACGcaGGGGGCCUCc -3'
miRNA:   3'- aUGGA---CCuG-GAGCUGCc-CCUCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 149985 0.68 0.726171
Target:  5'- -cCCUGGACCUgaCGACGcGGGAacccacgccggGGCuCUCu -3'
miRNA:   3'- auGGACCUGGA--GCUGC-CCCU-----------CUG-GAG- -5'
9001 5' -59.8 NC_002512.2 + 149415 0.66 0.823312
Target:  5'- gGCCgcgaggGGACCgCGGCGGGGgcGGGCg-- -3'
miRNA:   3'- aUGGa-----CCUGGaGCUGCCCC--UCUGgag -5'
9001 5' -59.8 NC_002512.2 + 147608 0.66 0.831344
Target:  5'- cGCCUcGACCcgacccUCGACGGGGGcGACgaCg -3'
miRNA:   3'- aUGGAcCUGG------AGCUGCCCCU-CUGgaG- -5'
9001 5' -59.8 NC_002512.2 + 142350 0.67 0.798298
Target:  5'- -uCCUGGACCUCa--GGGucGACCUg -3'
miRNA:   3'- auGGACCUGGAGcugCCCcuCUGGAg -5'
9001 5' -59.8 NC_002512.2 + 141542 0.68 0.716741
Target:  5'- cACCauggUGGACU---ACGGGGuGACCUCg -3'
miRNA:   3'- aUGG----ACCUGGagcUGCCCCuCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 136020 0.66 0.831344
Target:  5'- aACCgUGaGaACCUCGGaaGGGAGACCg- -3'
miRNA:   3'- aUGG-AC-C-UGGAGCUgcCCCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 135148 0.68 0.744803
Target:  5'- cGCCUGcGACCg-GGCGGGGuucGCCUg -3'
miRNA:   3'- aUGGAC-CUGGagCUGCCCCuc-UGGAg -5'
9001 5' -59.8 NC_002512.2 + 133585 0.68 0.735528
Target:  5'- cGCCggGGACC-CGAgCGGGccGGCCUCc -3'
miRNA:   3'- aUGGa-CCUGGaGCU-GCCCcuCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 132697 0.66 0.823312
Target:  5'- cGCCgcagacGGGCgUCGugGGcGAGAuCCUCg -3'
miRNA:   3'- aUGGa-----CCUGgAGCugCCcCUCU-GGAG- -5'
9001 5' -59.8 NC_002512.2 + 131994 0.79 0.216624
Target:  5'- cGCgUGGGCCgccccgggCGcCGGGGGGACCUCg -3'
miRNA:   3'- aUGgACCUGGa-------GCuGCCCCUCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 130213 0.76 0.297946
Target:  5'- gGCCagUGGuCCUCGGCGGcGGGGaACCUCu -3'
miRNA:   3'- aUGG--ACCuGGAGCUGCC-CCUC-UGGAG- -5'
9001 5' -59.8 NC_002512.2 + 129541 0.66 0.815122
Target:  5'- cGCCgucucccuauUGGGCgUCGACGaggcccGGGAGGCCg- -3'
miRNA:   3'- aUGG----------ACCUGgAGCUGC------CCCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 128380 0.68 0.735528
Target:  5'- -cCCUGuGCUaCGACGGGGAGAgcgaCUCg -3'
miRNA:   3'- auGGACcUGGaGCUGCCCCUCUg---GAG- -5'
9001 5' -59.8 NC_002512.2 + 128201 0.69 0.649333
Target:  5'- cGCCggcgGGACCgggGACGGGGAcGACUg- -3'
miRNA:   3'- aUGGa---CCUGGag-CUGCCCCU-CUGGag -5'
9001 5' -59.8 NC_002512.2 + 123907 0.67 0.780929
Target:  5'- cACCU--ACCUCGACGGccaGGaAGACCUg -3'
miRNA:   3'- aUGGAccUGGAGCUGCC---CC-UCUGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.