miRNA display CGI


Results 41 - 60 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9001 5' -59.8 NC_002512.2 + 100486 0.69 0.659059
Target:  5'- gGCCcGGACCU---UGGGGAGGCCg- -3'
miRNA:   3'- aUGGaCCUGGAgcuGCCCCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 183499 0.7 0.610375
Target:  5'- cGCCUacGGCCgCGAgGGGGAGGCCg- -3'
miRNA:   3'- aUGGAc-CUGGaGCUgCCCCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 158918 0.7 0.609403
Target:  5'- gGCCgaguacGGCUUCGGCGGGGGcgccggcGGCCUCu -3'
miRNA:   3'- aUGGac----CUGGAGCUGCCCCU-------CUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 199586 0.7 0.590958
Target:  5'- gUACCgcgGGuCgUCGACGcGGGGGCCUCc -3'
miRNA:   3'- -AUGGa--CCuGgAGCUGCcCCUCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 226191 0.67 0.797442
Target:  5'- gACCgggucGACCUCcgucgggGACGGGaGGACCUCc -3'
miRNA:   3'- aUGGac---CUGGAG-------CUGCCCcUCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 142350 0.67 0.798298
Target:  5'- -uCCUGGACCUCa--GGGucGACCUg -3'
miRNA:   3'- auGGACCUGGAGcugCCCcuCUGGAg -5'
9001 5' -59.8 NC_002512.2 + 215132 0.67 0.806782
Target:  5'- gGCCgGGGuCCgcgCGACgGGGGAGGCgaCg -3'
miRNA:   3'- aUGGaCCU-GGa--GCUG-CCCCUCUGgaG- -5'
9001 5' -59.8 NC_002512.2 + 223193 0.66 0.84691
Target:  5'- ----cGGGCCgccCGACGGGGAcGGCgUCc -3'
miRNA:   3'- auggaCCUGGa--GCUGCCCCU-CUGgAG- -5'
9001 5' -59.8 NC_002512.2 + 74581 0.66 0.84691
Target:  5'- cGCuCUGGugCUCGAggcCGGGGc--CCUCc -3'
miRNA:   3'- aUG-GACCugGAGCU---GCCCCucuGGAG- -5'
9001 5' -59.8 NC_002512.2 + 106536 0.66 0.838433
Target:  5'- gGCCccGGACCUUgGACGGGGGcuccagcGGCC-Cg -3'
miRNA:   3'- aUGGa-CCUGGAG-CUGCCCCU-------CUGGaG- -5'
9001 5' -59.8 NC_002512.2 + 220318 0.66 0.838433
Target:  5'- gGCCggGGGCCgggCucCGGGGGGccggacgGCCUCg -3'
miRNA:   3'- aUGGa-CCUGGa--GcuGCCCCUC-------UGGAG- -5'
9001 5' -59.8 NC_002512.2 + 147608 0.66 0.831344
Target:  5'- cGCCUcGACCcgacccUCGACGGGGGcGACgaCg -3'
miRNA:   3'- aUGGAcCUGG------AGCUGCCCCU-CUGgaG- -5'
9001 5' -59.8 NC_002512.2 + 185964 0.66 0.831344
Target:  5'- cGCCUGGAgCUCGA-GGGcaacGGCCUg -3'
miRNA:   3'- aUGGACCUgGAGCUgCCCcu--CUGGAg -5'
9001 5' -59.8 NC_002512.2 + 174419 0.66 0.831344
Target:  5'- cGCCgGGGCCUcCGuCGGGGcuACCa- -3'
miRNA:   3'- aUGGaCCUGGA-GCuGCCCCucUGGag -5'
9001 5' -59.8 NC_002512.2 + 107209 0.66 0.831344
Target:  5'- aGCC-GGGCCgCGGcCGGGGAG-CCg- -3'
miRNA:   3'- aUGGaCCUGGaGCU-GCCCCUCuGGag -5'
9001 5' -59.8 NC_002512.2 + 136020 0.66 0.831344
Target:  5'- aACCgUGaGaACCUCGGaaGGGAGACCg- -3'
miRNA:   3'- aUGG-AC-C-UGGAGCUgcCCCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 132697 0.66 0.823312
Target:  5'- cGCCgcagacGGGCgUCGugGGcGAGAuCCUCg -3'
miRNA:   3'- aUGGa-----CCUGgAGCugCCcCUCU-GGAG- -5'
9001 5' -59.8 NC_002512.2 + 149415 0.66 0.823312
Target:  5'- gGCCgcgaggGGACCgCGGCGGGGgcGGGCg-- -3'
miRNA:   3'- aUGGa-----CCUGGaGCUGCCCC--UCUGgag -5'
9001 5' -59.8 NC_002512.2 + 155357 0.66 0.815122
Target:  5'- cGCCUGGcuguACCUCGuCaGGcGGGACCg- -3'
miRNA:   3'- aUGGACC----UGGAGCuGcCC-CUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 195587 0.66 0.815122
Target:  5'- gACCgaggGGAacgccagucaCUCGGCGGGGcGGCCa- -3'
miRNA:   3'- aUGGa---CCUg---------GAGCUGCCCCuCUGGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.