miRNA display CGI


Results 61 - 74 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9001 5' -59.8 NC_002512.2 + 74581 0.66 0.84691
Target:  5'- cGCuCUGGugCUCGAggcCGGGGc--CCUCc -3'
miRNA:   3'- aUG-GACCugGAGCU---GCCCCucuGGAG- -5'
9001 5' -59.8 NC_002512.2 + 223193 0.66 0.84691
Target:  5'- ----cGGGCCgccCGACGGGGAcGGCgUCc -3'
miRNA:   3'- auggaCCUGGa--GCUGCCCCU-CUGgAG- -5'
9001 5' -59.8 NC_002512.2 + 132697 0.66 0.823312
Target:  5'- cGCCgcagacGGGCgUCGugGGcGAGAuCCUCg -3'
miRNA:   3'- aUGGa-----CCUGgAGCugCCcCUCU-GGAG- -5'
9001 5' -59.8 NC_002512.2 + 149415 0.66 0.823312
Target:  5'- gGCCgcgaggGGACCgCGGCGGGGgcGGGCg-- -3'
miRNA:   3'- aUGGa-----CCUGGaGCUGCCCC--UCUGgag -5'
9001 5' -59.8 NC_002512.2 + 185521 0.68 0.753988
Target:  5'- gGCCUGccgcuCUUCGAgGGGGuGGCCUa -3'
miRNA:   3'- aUGGACcu---GGAGCUgCCCCuCUGGAg -5'
9001 5' -59.8 NC_002512.2 + 226892 0.68 0.753988
Target:  5'- gGCCcgGGACCgggCcACGcGGGAGGCCa- -3'
miRNA:   3'- aUGGa-CCUGGa--GcUGC-CCCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 224029 0.67 0.772059
Target:  5'- cGCCcgGGACUcCGACGGGGccGCCg- -3'
miRNA:   3'- aUGGa-CCUGGaGCUGCCCCucUGGag -5'
9001 5' -59.8 NC_002512.2 + 123907 0.67 0.780929
Target:  5'- cACCU--ACCUCGACGGccaGGaAGACCUg -3'
miRNA:   3'- aUGGAccUGGAGCUGCC---CC-UCUGGAg -5'
9001 5' -59.8 NC_002512.2 + 226191 0.67 0.797442
Target:  5'- gACCgggucGACCUCcgucgggGACGGGaGGACCUCc -3'
miRNA:   3'- aUGGac---CUGGAG-------CUGCCCcUCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 142350 0.67 0.798298
Target:  5'- -uCCUGGACCUCa--GGGucGACCUg -3'
miRNA:   3'- auGGACCUGGAGcugCCCcuCUGGAg -5'
9001 5' -59.8 NC_002512.2 + 215132 0.67 0.806782
Target:  5'- gGCCgGGGuCCgcgCGACgGGGGAGGCgaCg -3'
miRNA:   3'- aUGGaCCU-GGa--GCUG-CCCCUCUGgaG- -5'
9001 5' -59.8 NC_002512.2 + 195587 0.66 0.815122
Target:  5'- gACCgaggGGAacgccagucaCUCGGCGGGGcGGCCa- -3'
miRNA:   3'- aUGGa---CCUg---------GAGCUGCCCCuCUGGag -5'
9001 5' -59.8 NC_002512.2 + 155357 0.66 0.815122
Target:  5'- cGCCUGGcuguACCUCGuCaGGcGGGACCg- -3'
miRNA:   3'- aUGGACC----UGGAGCuGcCC-CUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 120787 0.66 0.853686
Target:  5'- aGCCUGGcGCUgacggccacggugUCGACGGaccuggcgcgcGGGGACCUg -3'
miRNA:   3'- aUGGACC-UGG-------------AGCUGCC-----------CCUCUGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.