miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9001 5' -59.8 NC_002512.2 + 108530 0.69 0.68809
Target:  5'- gGCCggGGACC-CGACGGcGGAGaagguccgccggGCCUUc -3'
miRNA:   3'- aUGGa-CCUGGaGCUGCC-CCUC------------UGGAG- -5'
9001 5' -59.8 NC_002512.2 + 192317 0.68 0.707246
Target:  5'- -uCCUGGAUCggUGACGGGGcGGcuCCUCu -3'
miRNA:   3'- auGGACCUGGa-GCUGCCCCuCU--GGAG- -5'
9001 5' -59.8 NC_002512.2 + 123907 0.67 0.780929
Target:  5'- cACCU--ACCUCGACGGccaGGaAGACCUg -3'
miRNA:   3'- aUGGAccUGGAGCUGCC---CC-UCUGGAg -5'
9001 5' -59.8 NC_002512.2 + 215132 0.67 0.806782
Target:  5'- gGCCgGGGuCCgcgCGACgGGGGAGGCgaCg -3'
miRNA:   3'- aUGGaCCU-GGa--GCUG-CCCCUCUGgaG- -5'
9001 5' -59.8 NC_002512.2 + 109841 0.71 0.53354
Target:  5'- cGCCgggcgucggGGACCggcguggCGGCGGuGGGGACCUa -3'
miRNA:   3'- aUGGa--------CCUGGa------GCUGCC-CCUCUGGAg -5'
9001 5' -59.8 NC_002512.2 + 183499 0.7 0.610375
Target:  5'- cGCCUacGGCCgCGAgGGGGAGGCCg- -3'
miRNA:   3'- aUGGAc-CUGGaGCUgCCCCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 185521 0.68 0.753988
Target:  5'- gGCCUGccgcuCUUCGAgGGGGuGGCCUa -3'
miRNA:   3'- aUGGACcu---GGAGCUgCCCCuCUGGAg -5'
9001 5' -59.8 NC_002512.2 + 195587 0.66 0.815122
Target:  5'- gACCgaggGGAacgccagucaCUCGGCGGGGcGGCCa- -3'
miRNA:   3'- aUGGa---CCUg---------GAGCUGCCCCuCUGGag -5'
9001 5' -59.8 NC_002512.2 + 100486 0.69 0.659059
Target:  5'- gGCCcGGACCU---UGGGGAGGCCg- -3'
miRNA:   3'- aUGGaCCUGGAgcuGCCCCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 155357 0.66 0.815122
Target:  5'- cGCCUGGcuguACCUCGuCaGGcGGGACCg- -3'
miRNA:   3'- aUGGACC----UGGAGCuGcCC-CUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 149985 0.68 0.726171
Target:  5'- -cCCUGGACCUgaCGACGcGGGAacccacgccggGGCuCUCu -3'
miRNA:   3'- auGGACCUGGA--GCUGC-CCCU-----------CUG-GAG- -5'
9001 5' -59.8 NC_002512.2 + 90484 0.69 0.668765
Target:  5'- cACCgGGGcguCCUCGACGGGaucGGGGCCg- -3'
miRNA:   3'- aUGGaCCU---GGAGCUGCCC---CUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 226892 0.68 0.753988
Target:  5'- gGCCcgGGACCgggCcACGcGGGAGGCCa- -3'
miRNA:   3'- aUGGa-CCUGGa--GcUGC-CCCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 224029 0.67 0.772059
Target:  5'- cGCCcgGGACUcCGACGGGGccGCCg- -3'
miRNA:   3'- aUGGa-CCUGGaGCUGCCCCucUGGag -5'
9001 5' -59.8 NC_002512.2 + 226191 0.67 0.797442
Target:  5'- gACCgggucGACCUCcgucgggGACGGGaGGACCUCc -3'
miRNA:   3'- aUGGac---CUGGAG-------CUGCCCcUCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 142350 0.67 0.798298
Target:  5'- -uCCUGGACCUCa--GGGucGACCUg -3'
miRNA:   3'- auGGACCUGGAGcugCCCcuCUGGAg -5'
9001 5' -59.8 NC_002512.2 + 225219 0.75 0.332248
Target:  5'- -uCCUGGGCUUCGACGcgccGGcGGGGCCUCc -3'
miRNA:   3'- auGGACCUGGAGCUGC----CC-CUCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 185065 0.72 0.513892
Target:  5'- gACCcGGGCCUCGACcGGGAGcucggccGCUUCu -3'
miRNA:   3'- aUGGaCCUGGAGCUGcCCCUC-------UGGAG- -5'
9001 5' -59.8 NC_002512.2 + 89426 0.71 0.57165
Target:  5'- gGCCUcGGGCgUCGGCGGGGucacguccGGGCC-Ca -3'
miRNA:   3'- aUGGA-CCUGgAGCUGCCCC--------UCUGGaG- -5'
9001 5' -59.8 NC_002512.2 + 158918 0.7 0.609403
Target:  5'- gGCCgaguacGGCUUCGGCGGGGGcgccggcGGCCUCu -3'
miRNA:   3'- aUGGac----CUGGAGCUGCCCCU-------CUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.