miRNA display CGI


Results 41 - 60 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9001 5' -59.8 NC_002512.2 + 225219 0.75 0.332248
Target:  5'- -uCCUGGGCUUCGACGcgccGGcGGGGCCUCc -3'
miRNA:   3'- auGGACCUGGAGCUGC----CC-CUCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 184794 0.81 0.151338
Target:  5'- gGCCcGGGCCUCcGCGGGGAGACCc- -3'
miRNA:   3'- aUGGaCCUGGAGcUGCCCCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 183696 1.06 0.003083
Target:  5'- cUACCUGGACCUCGACGGGGAGACCUCc -3'
miRNA:   3'- -AUGGACCUGGAGCUGCCCCUCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 174419 0.66 0.831344
Target:  5'- cGCCgGGGCCUcCGuCGGGGcuACCa- -3'
miRNA:   3'- aUGGaCCUGGA-GCuGCCCCucUGGag -5'
9001 5' -59.8 NC_002512.2 + 152673 0.66 0.815122
Target:  5'- cGCCUcccGGuCgCUCGACGcaGGGGGCCUCc -3'
miRNA:   3'- aUGGA---CCuG-GAGCUGCc-CCUCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 74295 0.66 0.854431
Target:  5'- -cCCgUGGuCCUCGACGGaGGAcagGACgUCc -3'
miRNA:   3'- auGG-ACCuGGAGCUGCC-CCU---CUGgAG- -5'
9001 5' -59.8 NC_002512.2 + 90044 0.72 0.505561
Target:  5'- gGCCUGG-CCUCGcuCGGGGucGACCa- -3'
miRNA:   3'- aUGGACCuGGAGCu-GCCCCu-CUGGag -5'
9001 5' -59.8 NC_002512.2 + 63018 0.66 0.854431
Target:  5'- gUACCaGGAgCUCGGCGagcaGGGAGcGCCg- -3'
miRNA:   3'- -AUGGaCCUgGAGCUGC----CCCUC-UGGag -5'
9001 5' -59.8 NC_002512.2 + 13435 0.66 0.854431
Target:  5'- cUACCUGGGCuuCUCGAUGGaGAGGgCg- -3'
miRNA:   3'- -AUGGACCUG--GAGCUGCCcCUCUgGag -5'
9001 5' -59.8 NC_002512.2 + 98325 0.7 0.633749
Target:  5'- gGCUcgGGGCCgggGACGGGGAGgggggcggccccuccGCCUCg -3'
miRNA:   3'- aUGGa-CCUGGag-CUGCCCCUC---------------UGGAG- -5'
9001 5' -59.8 NC_002512.2 + 128201 0.69 0.649333
Target:  5'- cGCCggcgGGACCgggGACGGGGAcGACUg- -3'
miRNA:   3'- aUGGa---CCUGGag-CUGCCCCU-CUGGag -5'
9001 5' -59.8 NC_002512.2 + 115876 0.66 0.84691
Target:  5'- gUGCCgcugcgGGGCCgaCGGCGGcGGGACCa- -3'
miRNA:   3'- -AUGGa-----CCUGGa-GCUGCCcCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 75480 0.66 0.831344
Target:  5'- uUGCCUcGGACCccgaucgccucCGACGGGGgcgGGACUUUc -3'
miRNA:   3'- -AUGGA-CCUGGa----------GCUGCCCC---UCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 129541 0.66 0.815122
Target:  5'- cGCCgucucccuauUGGGCgUCGACGaggcccGGGAGGCCg- -3'
miRNA:   3'- aUGG----------ACCUGgAGCUGC------CCCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 133585 0.68 0.735528
Target:  5'- cGCCggGGACC-CGAgCGGGccGGCCUCc -3'
miRNA:   3'- aUGGa-CCUGGaGCU-GCCCcuCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 135148 0.68 0.744803
Target:  5'- cGCCUGcGACCg-GGCGGGGuucGCCUg -3'
miRNA:   3'- aUGGAC-CUGGagCUGCCCCuc-UGGAg -5'
9001 5' -59.8 NC_002512.2 + 72533 0.67 0.763076
Target:  5'- gGCCcGGACCUCGGCGGccAGGCg-- -3'
miRNA:   3'- aUGGaCCUGGAGCUGCCccUCUGgag -5'
9001 5' -59.8 NC_002512.2 + 80820 0.67 0.763076
Target:  5'- cGCCUcGGCgUCGGCGGaGGGGccccguaggcgaGCCUCg -3'
miRNA:   3'- aUGGAcCUGgAGCUGCC-CCUC------------UGGAG- -5'
9001 5' -59.8 NC_002512.2 + 31773 0.67 0.768479
Target:  5'- aACCUcaaggGGGCCaaacccuacucggCGACGGGGAGACg-- -3'
miRNA:   3'- aUGGA-----CCUGGa------------GCUGCCCCUCUGgag -5'
9001 5' -59.8 NC_002512.2 + 53147 0.66 0.831344
Target:  5'- gACCcugaaGGACCU-GACGGcGGAGAUCa- -3'
miRNA:   3'- aUGGa----CCUGGAgCUGCC-CCUCUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.