Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9001 | 5' | -59.8 | NC_002512.2 | + | 129541 | 0.66 | 0.815122 |
Target: 5'- cGCCgucucccuauUGGGCgUCGACGaggcccGGGAGGCCg- -3' miRNA: 3'- aUGG----------ACCUGgAGCUGC------CCCUCUGGag -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 121775 | 0.66 | 0.815122 |
Target: 5'- gACCgcGGACCgccgaGGCGGGGAcGCCg- -3' miRNA: 3'- aUGGa-CCUGGag---CUGCCCCUcUGGag -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 195587 | 0.66 | 0.815122 |
Target: 5'- gACCgaggGGAacgccagucaCUCGGCGGGGcGGCCa- -3' miRNA: 3'- aUGGa---CCUg---------GAGCUGCCCCuCUGGag -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 155357 | 0.66 | 0.815122 |
Target: 5'- cGCCUGGcuguACCUCGuCaGGcGGGACCg- -3' miRNA: 3'- aUGGACC----UGGAGCuGcCC-CUCUGGag -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 83008 | 0.67 | 0.806782 |
Target: 5'- cGCCUGGGCCUCcgGGCGGuaGuGGCCcCg -3' miRNA: 3'- aUGGACCUGGAG--CUGCCc-CuCUGGaG- -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 215132 | 0.67 | 0.806782 |
Target: 5'- gGCCgGGGuCCgcgCGACgGGGGAGGCgaCg -3' miRNA: 3'- aUGGaCCU-GGa--GCUG-CCCCUCUGgaG- -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 43653 | 0.67 | 0.806782 |
Target: 5'- gACCgGGACCUCGcccuCGGuGGcGGCCg- -3' miRNA: 3'- aUGGaCCUGGAGCu---GCC-CCuCUGGag -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 142350 | 0.67 | 0.798298 |
Target: 5'- -uCCUGGACCUCa--GGGucGACCUg -3' miRNA: 3'- auGGACCUGGAGcugCCCcuCUGGAg -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 226191 | 0.67 | 0.797442 |
Target: 5'- gACCgggucGACCUCcgucgggGACGGGaGGACCUCc -3' miRNA: 3'- aUGGac---CUGGAG-------CUGCCCcUCUGGAG- -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 55033 | 0.67 | 0.789678 |
Target: 5'- aGCCggucGGGCCgccuacCGACGGGaGAGACgaUCg -3' miRNA: 3'- aUGGa---CCUGGa-----GCUGCCC-CUCUGg-AG- -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 86516 | 0.67 | 0.789678 |
Target: 5'- aGCCgu--CCUUGAgCGGGGAGGCCcCa -3' miRNA: 3'- aUGGaccuGGAGCU-GCCCCUCUGGaG- -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 123733 | 0.67 | 0.780929 |
Target: 5'- gUGCUcGGACCU--GCGGGGucGGACCUg -3' miRNA: 3'- -AUGGaCCUGGAgcUGCCCC--UCUGGAg -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 123907 | 0.67 | 0.780929 |
Target: 5'- cACCU--ACCUCGACGGccaGGaAGACCUg -3' miRNA: 3'- aUGGAccUGGAGCUGCC---CC-UCUGGAg -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 224029 | 0.67 | 0.772059 |
Target: 5'- cGCCcgGGACUcCGACGGGGccGCCg- -3' miRNA: 3'- aUGGa-CCUGGaGCUGCCCCucUGGag -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 31773 | 0.67 | 0.768479 |
Target: 5'- aACCUcaaggGGGCCaaacccuacucggCGACGGGGAGACg-- -3' miRNA: 3'- aUGGA-----CCUGGa------------GCUGCCCCUCUGgag -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 72533 | 0.67 | 0.763076 |
Target: 5'- gGCCcGGACCUCGGCGGccAGGCg-- -3' miRNA: 3'- aUGGaCCUGGAGCUGCCccUCUGgag -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 80820 | 0.67 | 0.763076 |
Target: 5'- cGCCUcGGCgUCGGCGGaGGGGccccguaggcgaGCCUCg -3' miRNA: 3'- aUGGAcCUGgAGCUGCC-CCUC------------UGGAG- -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 226892 | 0.68 | 0.753988 |
Target: 5'- gGCCcgGGACCgggCcACGcGGGAGGCCa- -3' miRNA: 3'- aUGGa-CCUGGa--GcUGC-CCCUCUGGag -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 185521 | 0.68 | 0.753988 |
Target: 5'- gGCCUGccgcuCUUCGAgGGGGuGGCCUa -3' miRNA: 3'- aUGGACcu---GGAGCUgCCCCuCUGGAg -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 135148 | 0.68 | 0.744803 |
Target: 5'- cGCCUGcGACCg-GGCGGGGuucGCCUg -3' miRNA: 3'- aUGGAC-CUGGagCUGCCCCuc-UGGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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