Results 1 - 20 of 211 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9002 | 3' | -54.6 | NC_002512.2 | + | 132008 | 0.66 | 0.984875 |
Target: 5'- gGGggGAUCucGCGUcgGCGGgcggGUCCGUc -3' miRNA: 3'- -UCuuCUAGcuCGCG--CGCUag--CAGGCG- -5' |
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9002 | 3' | -54.6 | NC_002512.2 | + | 48341 | 0.66 | 0.984875 |
Target: 5'- cGAGGAcaucgcgCGGGCGUGCGAg---CUGCu -3' miRNA: 3'- uCUUCUa------GCUCGCGCGCUagcaGGCG- -5' |
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9002 | 3' | -54.6 | NC_002512.2 | + | 74691 | 0.66 | 0.984875 |
Target: 5'- gGGAGGA-CGGG-GCGCGGU-GUCCu- -3' miRNA: 3'- -UCUUCUaGCUCgCGCGCUAgCAGGcg -5' |
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9002 | 3' | -54.6 | NC_002512.2 | + | 180855 | 0.66 | 0.984875 |
Target: 5'- cAGcAGcUCGAG-GaUGCGuUCGUCCGCg -3' miRNA: 3'- -UCuUCuAGCUCgC-GCGCuAGCAGGCG- -5' |
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9002 | 3' | -54.6 | NC_002512.2 | + | 125192 | 0.66 | 0.984875 |
Target: 5'- gAGAGGA-CGAgacuccggucGCGCGUGucGUCGUCgGUc -3' miRNA: 3'- -UCUUCUaGCU----------CGCGCGC--UAGCAGgCG- -5' |
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9002 | 3' | -54.6 | NC_002512.2 | + | 143201 | 0.66 | 0.984875 |
Target: 5'- cGAGGGUgGuGCcgucccccucGCGCGc-CGUCCGCu -3' miRNA: 3'- uCUUCUAgCuCG----------CGCGCuaGCAGGCG- -5' |
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9002 | 3' | -54.6 | NC_002512.2 | + | 83869 | 0.66 | 0.984875 |
Target: 5'- uAGAcgGGGUa-GGCGuCGCGGUCGaUCGCg -3' miRNA: 3'- -UCU--UCUAgcUCGC-GCGCUAGCaGGCG- -5' |
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9002 | 3' | -54.6 | NC_002512.2 | + | 190937 | 0.66 | 0.984875 |
Target: 5'- cGGAaccAGAccCGGGCGCacGCGggCGcCCGCc -3' miRNA: 3'- -UCU---UCUa-GCUCGCG--CGCuaGCaGGCG- -5' |
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9002 | 3' | -54.6 | NC_002512.2 | + | 157594 | 0.66 | 0.984875 |
Target: 5'- cAGguGAUCGccGGCGCGU--UCG-CCGCc -3' miRNA: 3'- -UCuuCUAGC--UCGCGCGcuAGCaGGCG- -5' |
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9002 | 3' | -54.6 | NC_002512.2 | + | 7428 | 0.66 | 0.984875 |
Target: 5'- cGAGGGcCG-GCGCGaGGUUGgCCGCg -3' miRNA: 3'- uCUUCUaGCuCGCGCgCUAGCaGGCG- -5' |
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9002 | 3' | -54.6 | NC_002512.2 | + | 130239 | 0.66 | 0.984353 |
Target: 5'- cGggGAucggcUCGGGCGCcgggcccuccgaggGCGA-CGaCCGCg -3' miRNA: 3'- uCuuCU-----AGCUCGCG--------------CGCUaGCaGGCG- -5' |
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9002 | 3' | -54.6 | NC_002512.2 | + | 225840 | 0.66 | 0.983084 |
Target: 5'- cGGggGAUCGAGC-CGCuccUGUCC-Cg -3' miRNA: 3'- -UCuuCUAGCUCGcGCGcuaGCAGGcG- -5' |
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9002 | 3' | -54.6 | NC_002512.2 | + | 173422 | 0.66 | 0.983084 |
Target: 5'- cGucGAUCGcaucGCGCGCc-UCGUCuCGCa -3' miRNA: 3'- uCuuCUAGCu---CGCGCGcuAGCAG-GCG- -5' |
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9002 | 3' | -54.6 | NC_002512.2 | + | 82284 | 0.66 | 0.983084 |
Target: 5'- cGAGGGUCGGGUcgagGCGaCGggCGUagCGCu -3' miRNA: 3'- uCUUCUAGCUCG----CGC-GCuaGCAg-GCG- -5' |
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9002 | 3' | -54.6 | NC_002512.2 | + | 181183 | 0.66 | 0.983084 |
Target: 5'- uAGGAG-UCGAaCGCGUGGuccUCGcCCGUg -3' miRNA: 3'- -UCUUCuAGCUcGCGCGCU---AGCaGGCG- -5' |
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9002 | 3' | -54.6 | NC_002512.2 | + | 195040 | 0.66 | 0.981341 |
Target: 5'- cGAAGAagccgccgcggcccgCGGGCGgGagGGUCGUCCGg -3' miRNA: 3'- uCUUCUa--------------GCUCGCgCg-CUAGCAGGCg -5' |
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9002 | 3' | -54.6 | NC_002512.2 | + | 45162 | 0.66 | 0.981139 |
Target: 5'- ----cGUCGAuGCGCGCGuagaaGUCGUCCu- -3' miRNA: 3'- ucuucUAGCU-CGCGCGC-----UAGCAGGcg -5' |
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9002 | 3' | -54.6 | NC_002512.2 | + | 92778 | 0.66 | 0.981139 |
Target: 5'- --uAGAUCG-GCGUGCGGUucaCGUaCUGCc -3' miRNA: 3'- ucuUCUAGCuCGCGCGCUA---GCA-GGCG- -5' |
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9002 | 3' | -54.6 | NC_002512.2 | + | 83799 | 0.66 | 0.981139 |
Target: 5'- cGAGGAccgcgUCGGGCGCGCcggCGgCgGCg -3' miRNA: 3'- uCUUCU-----AGCUCGCGCGcuaGCaGgCG- -5' |
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9002 | 3' | -54.6 | NC_002512.2 | + | 90117 | 0.66 | 0.981139 |
Target: 5'- --uGGAUCGcgggcgcccGGUGCGCGAggG-CCGCg -3' miRNA: 3'- ucuUCUAGC---------UCGCGCGCUagCaGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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