miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9002 3' -54.6 NC_002512.2 + 132008 0.66 0.984875
Target:  5'- gGGggGAUCucGCGUcgGCGGgcggGUCCGUc -3'
miRNA:   3'- -UCuuCUAGcuCGCG--CGCUag--CAGGCG- -5'
9002 3' -54.6 NC_002512.2 + 83869 0.66 0.984875
Target:  5'- uAGAcgGGGUa-GGCGuCGCGGUCGaUCGCg -3'
miRNA:   3'- -UCU--UCUAgcUCGC-GCGCUAGCaGGCG- -5'
9002 3' -54.6 NC_002512.2 + 7428 0.66 0.984875
Target:  5'- cGAGGGcCG-GCGCGaGGUUGgCCGCg -3'
miRNA:   3'- uCUUCUaGCuCGCGCgCUAGCaGGCG- -5'
9002 3' -54.6 NC_002512.2 + 125192 0.66 0.984875
Target:  5'- gAGAGGA-CGAgacuccggucGCGCGUGucGUCGUCgGUc -3'
miRNA:   3'- -UCUUCUaGCU----------CGCGCGC--UAGCAGgCG- -5'
9002 3' -54.6 NC_002512.2 + 157594 0.66 0.984875
Target:  5'- cAGguGAUCGccGGCGCGU--UCG-CCGCc -3'
miRNA:   3'- -UCuuCUAGC--UCGCGCGcuAGCaGGCG- -5'
9002 3' -54.6 NC_002512.2 + 190937 0.66 0.984875
Target:  5'- cGGAaccAGAccCGGGCGCacGCGggCGcCCGCc -3'
miRNA:   3'- -UCU---UCUa-GCUCGCG--CGCuaGCaGGCG- -5'
9002 3' -54.6 NC_002512.2 + 143201 0.66 0.984875
Target:  5'- cGAGGGUgGuGCcgucccccucGCGCGc-CGUCCGCu -3'
miRNA:   3'- uCUUCUAgCuCG----------CGCGCuaGCAGGCG- -5'
9002 3' -54.6 NC_002512.2 + 48341 0.66 0.984875
Target:  5'- cGAGGAcaucgcgCGGGCGUGCGAg---CUGCu -3'
miRNA:   3'- uCUUCUa------GCUCGCGCGCUagcaGGCG- -5'
9002 3' -54.6 NC_002512.2 + 180855 0.66 0.984875
Target:  5'- cAGcAGcUCGAG-GaUGCGuUCGUCCGCg -3'
miRNA:   3'- -UCuUCuAGCUCgC-GCGCuAGCAGGCG- -5'
9002 3' -54.6 NC_002512.2 + 74691 0.66 0.984875
Target:  5'- gGGAGGA-CGGG-GCGCGGU-GUCCu- -3'
miRNA:   3'- -UCUUCUaGCUCgCGCGCUAgCAGGcg -5'
9002 3' -54.6 NC_002512.2 + 130239 0.66 0.984353
Target:  5'- cGggGAucggcUCGGGCGCcgggcccuccgaggGCGA-CGaCCGCg -3'
miRNA:   3'- uCuuCU-----AGCUCGCG--------------CGCUaGCaGGCG- -5'
9002 3' -54.6 NC_002512.2 + 82284 0.66 0.983084
Target:  5'- cGAGGGUCGGGUcgagGCGaCGggCGUagCGCu -3'
miRNA:   3'- uCUUCUAGCUCG----CGC-GCuaGCAg-GCG- -5'
9002 3' -54.6 NC_002512.2 + 173422 0.66 0.983084
Target:  5'- cGucGAUCGcaucGCGCGCc-UCGUCuCGCa -3'
miRNA:   3'- uCuuCUAGCu---CGCGCGcuAGCAG-GCG- -5'
9002 3' -54.6 NC_002512.2 + 181183 0.66 0.983084
Target:  5'- uAGGAG-UCGAaCGCGUGGuccUCGcCCGUg -3'
miRNA:   3'- -UCUUCuAGCUcGCGCGCU---AGCaGGCG- -5'
9002 3' -54.6 NC_002512.2 + 225840 0.66 0.983084
Target:  5'- cGGggGAUCGAGC-CGCuccUGUCC-Cg -3'
miRNA:   3'- -UCuuCUAGCUCGcGCGcuaGCAGGcG- -5'
9002 3' -54.6 NC_002512.2 + 195040 0.66 0.981341
Target:  5'- cGAAGAagccgccgcggcccgCGGGCGgGagGGUCGUCCGg -3'
miRNA:   3'- uCUUCUa--------------GCUCGCgCg-CUAGCAGGCg -5'
9002 3' -54.6 NC_002512.2 + 220101 0.66 0.981139
Target:  5'- gAGGAGGUCGAgGCGUccGUGAg---CCGCc -3'
miRNA:   3'- -UCUUCUAGCU-CGCG--CGCUagcaGGCG- -5'
9002 3' -54.6 NC_002512.2 + 45162 0.66 0.981139
Target:  5'- ----cGUCGAuGCGCGCGuagaaGUCGUCCu- -3'
miRNA:   3'- ucuucUAGCU-CGCGCGC-----UAGCAGGcg -5'
9002 3' -54.6 NC_002512.2 + 83799 0.66 0.981139
Target:  5'- cGAGGAccgcgUCGGGCGCGCcggCGgCgGCg -3'
miRNA:   3'- uCUUCU-----AGCUCGCGCGcuaGCaGgCG- -5'
9002 3' -54.6 NC_002512.2 + 92778 0.66 0.981139
Target:  5'- --uAGAUCG-GCGUGCGGUucaCGUaCUGCc -3'
miRNA:   3'- ucuUCUAGCuCGCGCGCUA---GCA-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.