miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9002 5' -59 NC_002512.2 + 55678 0.72 0.552497
Target:  5'- -gGCGGGGCgcUGAaCGCGCCGCUGUUc -3'
miRNA:   3'- gaUGCCCCG--GCUaGUGCGGCGGUAGu -5'
9002 5' -59 NC_002512.2 + 205141 0.71 0.620109
Target:  5'- -gACGGGaagaCGGUCACGCUGcCCGUCGc -3'
miRNA:   3'- gaUGCCCcg--GCUAGUGCGGC-GGUAGU- -5'
9002 5' -59 NC_002512.2 + 123099 0.71 0.620109
Target:  5'- -aGCGGGuCCGGcggaaccgUCcCGCCGCCGUCGg -3'
miRNA:   3'- gaUGCCCcGGCU--------AGuGCGGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 125026 0.71 0.620109
Target:  5'- -cGCGGGGCCGAg---GUCGCCGUgAg -3'
miRNA:   3'- gaUGCCCCGGCUagugCGGCGGUAgU- -5'
9002 5' -59 NC_002512.2 + 111193 0.71 0.620109
Target:  5'- -gGauGGGCaCGAUCGCGCCGaUCAUCu -3'
miRNA:   3'- gaUgcCCCG-GCUAGUGCGGC-GGUAGu -5'
9002 5' -59 NC_002512.2 + 217574 0.71 0.629852
Target:  5'- -gACGGcGaGCCGGUCcggcgGCGCCGCC-UCGg -3'
miRNA:   3'- gaUGCC-C-CGGCUAG-----UGCGGCGGuAGU- -5'
9002 5' -59 NC_002512.2 + 200513 0.71 0.629852
Target:  5'- --cCGGGGCuCGuccUCACGCUGCUGUCc -3'
miRNA:   3'- gauGCCCCG-GCu--AGUGCGGCGGUAGu -5'
9002 5' -59 NC_002512.2 + 82387 0.71 0.600657
Target:  5'- -gACGGGagaagcGCCGGUCGCGCcCGUCcgCAg -3'
miRNA:   3'- gaUGCCC------CGGCUAGUGCG-GCGGuaGU- -5'
9002 5' -59 NC_002512.2 + 211994 0.71 0.600657
Target:  5'- cCU-CGGGGCCGc---CGCCGCCuAUCAc -3'
miRNA:   3'- -GAuGCCCCGGCuaguGCGGCGG-UAGU- -5'
9002 5' -59 NC_002512.2 + 88110 0.71 0.629852
Target:  5'- -cGCGGGGCUGAUCACGgucagggucgacUCGUCGUa- -3'
miRNA:   3'- gaUGCCCCGGCUAGUGC------------GGCGGUAgu -5'
9002 5' -59 NC_002512.2 + 100313 0.71 0.590959
Target:  5'- -gACGGGGCCGAcgUCcCGgCGCC-UCGg -3'
miRNA:   3'- gaUGCCCCGGCU--AGuGCgGCGGuAGU- -5'
9002 5' -59 NC_002512.2 + 167271 0.71 0.629852
Target:  5'- -gGCGGGgaaGCUGG-C-CGCCGCCGUCAc -3'
miRNA:   3'- gaUGCCC---CGGCUaGuGCGGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 6348 0.71 0.610376
Target:  5'- -cGCGGGGCCGG-CGgGCCGCgGgcgCGu -3'
miRNA:   3'- gaUGCCCCGGCUaGUgCGGCGgUa--GU- -5'
9002 5' -59 NC_002512.2 + 139255 0.71 0.590959
Target:  5'- -cGCGGcGCCgGGUCGCGCCGCCcggCGc -3'
miRNA:   3'- gaUGCCcCGG-CUAGUGCGGCGGua-GU- -5'
9002 5' -59 NC_002512.2 + 95951 0.71 0.590959
Target:  5'- -gACGcGGGCCG-UCGggcCGCCGCCGUaCAg -3'
miRNA:   3'- gaUGC-CCCGGCuAGU---GCGGCGGUA-GU- -5'
9002 5' -59 NC_002512.2 + 150056 0.71 0.599686
Target:  5'- -gACGGGGCgGGagGgggggaccgccgcCGCCGCCGUCGg -3'
miRNA:   3'- gaUGCCCCGgCUagU-------------GCGGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 222231 0.7 0.68809
Target:  5'- --uCGGGGCCGcGUCcuuCGUCGCCGUg- -3'
miRNA:   3'- gauGCCCCGGC-UAGu--GCGGCGGUAgu -5'
9002 5' -59 NC_002512.2 + 123147 0.7 0.659059
Target:  5'- -gACGGGGCgGcg-GCGCCGCgAUCGc -3'
miRNA:   3'- gaUGCCCCGgCuagUGCGGCGgUAGU- -5'
9002 5' -59 NC_002512.2 + 186208 0.7 0.697693
Target:  5'- gCU-CGGGcGCCGAUgACGCCGCgGc-- -3'
miRNA:   3'- -GAuGCCC-CGGCUAgUGCGGCGgUagu -5'
9002 5' -59 NC_002512.2 + 75446 0.7 0.697693
Target:  5'- --uCGGGGCgGGacgUCcuguauggACGCCGCCAUCu -3'
miRNA:   3'- gauGCCCCGgCU---AG--------UGCGGCGGUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.