miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9003 5' -51.7 NC_002512.2 + 181842 1.09 0.012098
Target:  5'- gCGUGGUGGAACAGGAACGUGUUGCUGu -3'
miRNA:   3'- -GCACCACCUUGUCCUUGCACAACGAC- -5'
9003 5' -51.7 NC_002512.2 + 194810 0.78 0.651291
Target:  5'- cCG-GGUGGAGCAGGAGCucggcaccGUGgUGCUGu -3'
miRNA:   3'- -GCaCCACCUUGUCCUUG--------CACaACGAC- -5'
9003 5' -51.7 NC_002512.2 + 81981 0.71 0.928899
Target:  5'- gGUGGUGGcGGCGGGGGCGUcucgGggGCg- -3'
miRNA:   3'- gCACCACC-UUGUCCUUGCA----CaaCGac -5'
9003 5' -51.7 NC_002512.2 + 228059 0.7 0.947949
Target:  5'- gGUGGUGGcAGCAGGggUGgggGgaGCg- -3'
miRNA:   3'- gCACCACC-UUGUCCuuGCa--CaaCGac -5'
9003 5' -51.7 NC_002512.2 + 147053 0.7 0.963272
Target:  5'- gCGcGGaccGGGGCGGGAACGUGUggGCg- -3'
miRNA:   3'- -GCaCCa--CCUUGUCCUUGCACAa-CGac -5'
9003 5' -51.7 NC_002512.2 + 67174 0.69 0.975128
Target:  5'- -uUGGUGGAgacgaaGCGGGAGC-UGcUGCUGc -3'
miRNA:   3'- gcACCACCU------UGUCCUUGcACaACGAC- -5'
9003 5' -51.7 NC_002512.2 + 26221 0.69 0.977595
Target:  5'- cCGUGGcgacGGAGaCGGGAccgguauggACGUGcUGCUGg -3'
miRNA:   3'- -GCACCa---CCUU-GUCCU---------UGCACaACGAC- -5'
9003 5' -51.7 NC_002512.2 + 82352 0.67 0.991327
Target:  5'- --cGGUGGGcguGCGGGGGCGgcggaggGUgaUGCUGc -3'
miRNA:   3'- gcaCCACCU---UGUCCUUGCa------CA--ACGAC- -5'
9003 5' -51.7 NC_002512.2 + 191082 0.67 0.990118
Target:  5'- uGUGcggcaaGUGGGGguGGAugGUggGUUGCUGc -3'
miRNA:   3'- gCAC------CACCUUguCCUugCA--CAACGAC- -5'
9003 5' -51.7 NC_002512.2 + 176486 0.66 0.996346
Target:  5'- ----uUGGGACGGGGACGUGggGUc- -3'
miRNA:   3'- gcaccACCUUGUCCUUGCACaaCGac -5'
9003 5' -51.7 NC_002512.2 + 160118 0.66 0.995046
Target:  5'- --cGGUGGAGCAGGAccuggGCGagGUgGCg- -3'
miRNA:   3'- gcaCCACCUUGUCCU-----UGCa-CAaCGac -5'
9003 5' -51.7 NC_002512.2 + 121810 0.66 0.995046
Target:  5'- aCGUGGUGGAcagcacGCAcGGGGCGgGUgacCUGa -3'
miRNA:   3'- -GCACCACCU------UGU-CCUUGCaCAac-GAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.