miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9004 3' -56.4 NC_002512.2 + 4869 0.66 0.949012
Target:  5'- uCGcCGCGUGCGGcGccGGCuggaGGAGCGGc -3'
miRNA:   3'- uGCuGCGCACGUC-CuuCCG----CUUCGUC- -5'
9004 3' -56.4 NC_002512.2 + 201690 0.66 0.949012
Target:  5'- gGCGGcCGCGUcugguGCGGGAucGGCGGcGGCGu -3'
miRNA:   3'- -UGCU-GCGCA-----CGUCCUu-CCGCU-UCGUc -5'
9004 3' -56.4 NC_002512.2 + 127907 0.66 0.949012
Target:  5'- cGCGAC-CGU---GGGAGGCGAGGgCGGa -3'
miRNA:   3'- -UGCUGcGCAcguCCUUCCGCUUC-GUC- -5'
9004 3' -56.4 NC_002512.2 + 158967 0.66 0.949012
Target:  5'- gGCGGCgaGCGguucgGCGGccacGGCGggGCGGa -3'
miRNA:   3'- -UGCUG--CGCa----CGUCcuu-CCGCuuCGUC- -5'
9004 3' -56.4 NC_002512.2 + 153127 0.66 0.949012
Target:  5'- gGCGACG-G-GCGGGAcGGGCGAucCGGg -3'
miRNA:   3'- -UGCUGCgCaCGUCCU-UCCGCUucGUC- -5'
9004 3' -56.4 NC_002512.2 + 68410 0.66 0.946502
Target:  5'- uUGACGUGggGCAGGAucccgccguugucgcAGGCGuAGGCc- -3'
miRNA:   3'- uGCUGCGCa-CGUCCU---------------UCCGC-UUCGuc -5'
9004 3' -56.4 NC_002512.2 + 118958 0.66 0.944784
Target:  5'- aGCGugGgGcgGCGgcGGGAGGUGcuGCAGa -3'
miRNA:   3'- -UGCugCgCa-CGU--CCUUCCGCuuCGUC- -5'
9004 3' -56.4 NC_002512.2 + 200364 0.66 0.944784
Target:  5'- -gGACGgG-GCGGG-GGGUGAggGGCGGg -3'
miRNA:   3'- ugCUGCgCaCGUCCuUCCGCU--UCGUC- -5'
9004 3' -56.4 NC_002512.2 + 204988 0.66 0.944784
Target:  5'- gGCGACGgGgaccGGAAGGCgGggGCGa -3'
miRNA:   3'- -UGCUGCgCacguCCUUCCG-CuuCGUc -5'
9004 3' -56.4 NC_002512.2 + 222336 0.66 0.944784
Target:  5'- gGCGGCGCcucCAGGAggAGGaGGAGCGGc -3'
miRNA:   3'- -UGCUGCGcacGUCCU--UCCgCUUCGUC- -5'
9004 3' -56.4 NC_002512.2 + 227610 0.66 0.944784
Target:  5'- aGCGGCcggaggGCGgGCGGcGgcGGCGAGGuCAGg -3'
miRNA:   3'- -UGCUG------CGCaCGUC-CuuCCGCUUC-GUC- -5'
9004 3' -56.4 NC_002512.2 + 101518 0.66 0.944784
Target:  5'- cCGGCGaCG---GGGAGGGCGAGGgGGa -3'
miRNA:   3'- uGCUGC-GCacgUCCUUCCGCUUCgUC- -5'
9004 3' -56.4 NC_002512.2 + 132714 0.66 0.940334
Target:  5'- uCGAC-CGUcaGCAcGAAGGCG-AGCAGg -3'
miRNA:   3'- uGCUGcGCA--CGUcCUUCCGCuUCGUC- -5'
9004 3' -56.4 NC_002512.2 + 150053 0.66 0.940334
Target:  5'- gACGACGgG-GCGGGAGGG-GggGa-- -3'
miRNA:   3'- -UGCUGCgCaCGUCCUUCCgCuuCguc -5'
9004 3' -56.4 NC_002512.2 + 153395 0.66 0.940334
Target:  5'- aGCGACGUGgagcGCGGcGgcGGuCGAGGUGGc -3'
miRNA:   3'- -UGCUGCGCa---CGUC-CuuCC-GCUUCGUC- -5'
9004 3' -56.4 NC_002512.2 + 204706 0.66 0.940334
Target:  5'- cGCGACGuCGgcgacgGCGGGcccGGGGCGggGgGc -3'
miRNA:   3'- -UGCUGC-GCa-----CGUCC---UUCCGCuuCgUc -5'
9004 3' -56.4 NC_002512.2 + 170794 0.66 0.940334
Target:  5'- cGCGACGaCGgcgGCgAGGGgagcgacggGGGCGGcAGCGGc -3'
miRNA:   3'- -UGCUGC-GCa--CG-UCCU---------UCCGCU-UCGUC- -5'
9004 3' -56.4 NC_002512.2 + 115615 0.66 0.939877
Target:  5'- -gGACGCG-GCGGacccgcuggagaaGGAGGUGGAGCuGa -3'
miRNA:   3'- ugCUGCGCaCGUC-------------CUUCCGCUUCGuC- -5'
9004 3' -56.4 NC_002512.2 + 56552 0.66 0.939877
Target:  5'- -aGGCGCGUGcCGGGAccgaagaccccgcAGGCGgcGUu- -3'
miRNA:   3'- ugCUGCGCAC-GUCCU-------------UCCGCuuCGuc -5'
9004 3' -56.4 NC_002512.2 + 35222 0.66 0.937556
Target:  5'- gACGugGgCGUGCAGGAccGCccGAucggagaagaggacgGGCAGg -3'
miRNA:   3'- -UGCugC-GCACGUCCUucCG--CU---------------UCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.