miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9004 5' -66.3 NC_002512.2 + 223532 0.66 0.550079
Target:  5'- ---cGGCacgcGCCcgcGGCCCGCGgCCCCGc- -3'
miRNA:   3'- gugaCCGa---CGG---CCGGGCGC-GGGGCau -5'
9004 5' -66.3 NC_002512.2 + 54099 0.66 0.550079
Target:  5'- cCGCcaaGCUGUCGGCCUGCGacgugaccaCCCCGc- -3'
miRNA:   3'- -GUGac-CGACGGCCGGGCGC---------GGGGCau -5'
9004 5' -66.3 NC_002512.2 + 131752 0.66 0.550079
Target:  5'- gGCgGGCgGCCGcGacgaCCaGCGCCCCGg- -3'
miRNA:   3'- gUGaCCGaCGGC-Cg---GG-CGCGGGGCau -5'
9004 5' -66.3 NC_002512.2 + 211729 0.66 0.531769
Target:  5'- aGCUGuGCcucgGCCuGGCCCGCGacgcggCCCGg- -3'
miRNA:   3'- gUGAC-CGa---CGG-CCGGGCGCg-----GGGCau -5'
9004 5' -66.3 NC_002512.2 + 123389 0.66 0.531769
Target:  5'- cCGCUGGacgcgaagaucCUGCCgucGGCCCuG-GCCCCGUu -3'
miRNA:   3'- -GUGACC-----------GACGG---CCGGG-CgCGGGGCAu -5'
9004 5' -66.3 NC_002512.2 + 67736 0.66 0.531769
Target:  5'- uCGCggucGGCgUGCCGGCCuCGCGagCCGg- -3'
miRNA:   3'- -GUGa---CCG-ACGGCCGG-GCGCggGGCau -5'
9004 5' -66.3 NC_002512.2 + 82312 0.66 0.531769
Target:  5'- gCGCUGGgUGUagaGGgCCGCgggccGCCCCGg- -3'
miRNA:   3'- -GUGACCgACGg--CCgGGCG-----CGGGGCau -5'
9004 5' -66.3 NC_002512.2 + 114201 0.66 0.531769
Target:  5'- cCACcGuGCUGuaggcCCGGCCCGaGCCCaCGUGc -3'
miRNA:   3'- -GUGaC-CGAC-----GGCCGGGCgCGGG-GCAU- -5'
9004 5' -66.3 NC_002512.2 + 117724 0.66 0.531769
Target:  5'- uGCgGGCUcgagcGCCGGCUCGCcgucgaccGCCUCGUc -3'
miRNA:   3'- gUGaCCGA-----CGGCCGGGCG--------CGGGGCAu -5'
9004 5' -66.3 NC_002512.2 + 114802 0.66 0.531769
Target:  5'- aCGCgGGUgGCCaGGCgCCGCGCgacguuCCCGUGu -3'
miRNA:   3'- -GUGaCCGaCGG-CCG-GGCGCG------GGGCAU- -5'
9004 5' -66.3 NC_002512.2 + 149157 0.66 0.530859
Target:  5'- cCGCggGGCcggUGCCgcccgcgGGCCCGCGCgCCCu-- -3'
miRNA:   3'- -GUGa-CCG---ACGG-------CCGGGCGCG-GGGcau -5'
9004 5' -66.3 NC_002512.2 + 5264 0.66 0.528133
Target:  5'- cCGCggcGGCgaccccgagcccgGUCGGCaCCGCGUCCCGc- -3'
miRNA:   3'- -GUGa--CCGa------------CGGCCG-GGCGCGGGGCau -5'
9004 5' -66.3 NC_002512.2 + 188782 0.66 0.522696
Target:  5'- gGCggcGGCU-CCGGCCUcgGCGgCCCCGa- -3'
miRNA:   3'- gUGa--CCGAcGGCCGGG--CGC-GGGGCau -5'
9004 5' -66.3 NC_002512.2 + 214235 0.66 0.522696
Target:  5'- gGC-GGCUcGUCGGCUCGCcGCCCgCGg- -3'
miRNA:   3'- gUGaCCGA-CGGCCGGGCG-CGGG-GCau -5'
9004 5' -66.3 NC_002512.2 + 90915 0.66 0.519084
Target:  5'- gACUGGCggccgcgaacgggGCCGGCgCGgcCGCCgCCGUc -3'
miRNA:   3'- gUGACCGa------------CGGCCGgGC--GCGG-GGCAu -5'
9004 5' -66.3 NC_002512.2 + 58197 0.66 0.513684
Target:  5'- aCGCUGGUgaguggGCgCGGCgCGCaCCCCGc- -3'
miRNA:   3'- -GUGACCGa-----CG-GCCGgGCGcGGGGCau -5'
9004 5' -66.3 NC_002512.2 + 13322 0.66 0.513684
Target:  5'- uCGCUGGCccgccgcaUGCUGGCguUCGCGCgCCGc- -3'
miRNA:   3'- -GUGACCG--------ACGGCCG--GGCGCGgGGCau -5'
9004 5' -66.3 NC_002512.2 + 219207 0.66 0.513684
Target:  5'- cCGCUGcaCUGCCGGgCCG-GCCUCGg- -3'
miRNA:   3'- -GUGACc-GACGGCCgGGCgCGGGGCau -5'
9004 5' -66.3 NC_002512.2 + 157356 0.66 0.513684
Target:  5'- -cCUGGCcGCCgaGGUCCGgGCCgCCGg- -3'
miRNA:   3'- guGACCGaCGG--CCGGGCgCGG-GGCau -5'
9004 5' -66.3 NC_002512.2 + 116732 0.66 0.504736
Target:  5'- cCGCccGGCcgcgGCgaGGCCgGCGCCCCGc- -3'
miRNA:   3'- -GUGa-CCGa---CGg-CCGGgCGCGGGGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.