miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9006 3' -58.5 NC_002512.2 + 159137 0.66 0.889651
Target:  5'- cGCGgccgCUCCaagugaGGCGGccGGGCGcGCUcCCGUCc -3'
miRNA:   3'- -CGCa---GAGG------UCGCU--CCCGU-CGA-GGUAG- -5'
9006 3' -58.5 NC_002512.2 + 80702 0.66 0.889651
Target:  5'- gGCGUCcggggGGCGAGGGCGcGCgggCCcgCg -3'
miRNA:   3'- -CGCAGagg--UCGCUCCCGU-CGa--GGuaG- -5'
9006 3' -58.5 NC_002512.2 + 183973 0.66 0.883027
Target:  5'- gGCGUCgucgCCuGUcGGGGCggacAGCUCCccGUCg -3'
miRNA:   3'- -CGCAGa---GGuCGcUCCCG----UCGAGG--UAG- -5'
9006 3' -58.5 NC_002512.2 + 100686 0.66 0.883027
Target:  5'- cGCGg--CCAGCGGcGGCGGcCUCC-UCc -3'
miRNA:   3'- -CGCagaGGUCGCUcCCGUC-GAGGuAG- -5'
9006 3' -58.5 NC_002512.2 + 67769 0.66 0.883027
Target:  5'- uCGUCUCCGGCGccGGGGUcgucggugAGCUggCC-UCa -3'
miRNA:   3'- cGCAGAGGUCGC--UCCCG--------UCGA--GGuAG- -5'
9006 3' -58.5 NC_002512.2 + 94905 0.66 0.876197
Target:  5'- gGCGUC-CCGGuCGccGGGCagacAGCUCCGgaUCa -3'
miRNA:   3'- -CGCAGaGGUC-GCu-CCCG----UCGAGGU--AG- -5'
9006 3' -58.5 NC_002512.2 + 74391 0.66 0.876197
Target:  5'- -gGUCuUCCAGgaGAGcGGCGGCcauggCCGUCu -3'
miRNA:   3'- cgCAG-AGGUCg-CUC-CCGUCGa----GGUAG- -5'
9006 3' -58.5 NC_002512.2 + 134716 0.66 0.876197
Target:  5'- gGCGcUCUCCgccuAGCGAGGaC-GCUCCAc- -3'
miRNA:   3'- -CGC-AGAGG----UCGCUCCcGuCGAGGUag -5'
9006 3' -58.5 NC_002512.2 + 7038 0.66 0.869164
Target:  5'- uCGUCguUCgGGaCGaAGcGGCAGUUCCGUCg -3'
miRNA:   3'- cGCAG--AGgUC-GC-UC-CCGUCGAGGUAG- -5'
9006 3' -58.5 NC_002512.2 + 120780 0.66 0.869164
Target:  5'- gGCGgccgUCGGCGGGGGCGGCgggacggcggCgGUCu -3'
miRNA:   3'- -CGCaga-GGUCGCUCCCGUCGa---------GgUAG- -5'
9006 3' -58.5 NC_002512.2 + 128798 0.66 0.869164
Target:  5'- uGgGUCUCCGGCGugguccgcGGGCGGg-CCcUCg -3'
miRNA:   3'- -CgCAGAGGUCGCu-------CCCGUCgaGGuAG- -5'
9006 3' -58.5 NC_002512.2 + 153622 0.66 0.86845
Target:  5'- cCGUCgugacuaaUCCuucggcggacgggAGCGGGGGCAcGCUCC-UCa -3'
miRNA:   3'- cGCAG--------AGG-------------UCGCUCCCGU-CGAGGuAG- -5'
9006 3' -58.5 NC_002512.2 + 28708 0.66 0.86485
Target:  5'- aGCGg-UgCAGCGAGGggucccggcucaacuGCGGCaUCCGUCa -3'
miRNA:   3'- -CGCagAgGUCGCUCC---------------CGUCG-AGGUAG- -5'
9006 3' -58.5 NC_002512.2 + 111725 0.66 0.862666
Target:  5'- -aGUCUCCGGCGGGcacggucgccaugucGCGGUUCCGc- -3'
miRNA:   3'- cgCAGAGGUCGCUCc--------------CGUCGAGGUag -5'
9006 3' -58.5 NC_002512.2 + 97202 0.66 0.861934
Target:  5'- cCGUCUgCGGCGGcGGGCcgGGCgggaCGUCg -3'
miRNA:   3'- cGCAGAgGUCGCU-CCCG--UCGag--GUAG- -5'
9006 3' -58.5 NC_002512.2 + 15265 0.66 0.861934
Target:  5'- cGCGUC-CCcGCGAGGGUccccucuagucgGGCUgCAg- -3'
miRNA:   3'- -CGCAGaGGuCGCUCCCG------------UCGAgGUag -5'
9006 3' -58.5 NC_002512.2 + 34926 0.66 0.861934
Target:  5'- uGCGcUCgaUCC-GCGAGGGCGGa--CAUCa -3'
miRNA:   3'- -CGC-AG--AGGuCGCUCCCGUCgagGUAG- -5'
9006 3' -58.5 NC_002512.2 + 188647 0.67 0.854511
Target:  5'- gGCGcCggCGGCGGcGGCGGC-CCGUCg -3'
miRNA:   3'- -CGCaGagGUCGCUcCCGUCGaGGUAG- -5'
9006 3' -58.5 NC_002512.2 + 195284 0.67 0.854511
Target:  5'- cGCGUUcCCcGCGGGGGCcGGCgCCGa- -3'
miRNA:   3'- -CGCAGaGGuCGCUCCCG-UCGaGGUag -5'
9006 3' -58.5 NC_002512.2 + 136620 0.67 0.854511
Target:  5'- cGCGccCUCCAGCGuggccuuggacaGGGGCAGCgacUCgAUg -3'
miRNA:   3'- -CGCa-GAGGUCGC------------UCCCGUCG---AGgUAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.