miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9006 5' -54.8 NC_002512.2 + 91940 0.66 0.976732
Target:  5'- -----cGAGCUGU-UCCGCAGGCAGg -3'
miRNA:   3'- gccaaaCUUGACGcGGGUGUCCGUCg -5'
9006 5' -54.8 NC_002512.2 + 116947 0.66 0.976732
Target:  5'- cCGGUccgcGGGCUcGCGCgCCAcCGGGCcGCc -3'
miRNA:   3'- -GCCAaa--CUUGA-CGCG-GGU-GUCCGuCG- -5'
9006 5' -54.8 NC_002512.2 + 83612 0.66 0.976732
Target:  5'- cCGGggUUGGACacgGCGUu--CAGGCGGCc -3'
miRNA:   3'- -GCCa-AACUUGa--CGCGgguGUCCGUCG- -5'
9006 5' -54.8 NC_002512.2 + 4649 0.66 0.974241
Target:  5'- uGGUggGGAUcGCGCUaAC-GGCGGCg -3'
miRNA:   3'- gCCAaaCUUGaCGCGGgUGuCCGUCG- -5'
9006 5' -54.8 NC_002512.2 + 136832 0.66 0.974241
Target:  5'- cCGGU----ACaGCG-CCugGGGCAGCa -3'
miRNA:   3'- -GCCAaacuUGaCGCgGGugUCCGUCG- -5'
9006 5' -54.8 NC_002512.2 + 137778 0.66 0.974241
Target:  5'- gCGGUcUGGAggucgGCGCUCGgCGGGCcGCg -3'
miRNA:   3'- -GCCAaACUUga---CGCGGGU-GUCCGuCG- -5'
9006 5' -54.8 NC_002512.2 + 181470 0.66 0.971562
Target:  5'- cCGGUcgaaguccGggUagGUGCUCAgGGGCAGCa -3'
miRNA:   3'- -GCCAaa------CuuGa-CGCGGGUgUCCGUCG- -5'
9006 5' -54.8 NC_002512.2 + 72483 0.66 0.971562
Target:  5'- aGGUUgaaGAACUGCGU--GCAGcCGGCg -3'
miRNA:   3'- gCCAAa--CUUGACGCGggUGUCcGUCG- -5'
9006 5' -54.8 NC_002512.2 + 150409 0.66 0.971562
Target:  5'- -----cGAAC--CGCCCACGGGCGcGCg -3'
miRNA:   3'- gccaaaCUUGacGCGGGUGUCCGU-CG- -5'
9006 5' -54.8 NC_002512.2 + 223182 0.66 0.971562
Target:  5'- uGGUacgUGGACggGcCGCCCgACGGGgaCGGCg -3'
miRNA:   3'- gCCAa--ACUUGa-C-GCGGG-UGUCC--GUCG- -5'
9006 5' -54.8 NC_002512.2 + 154611 0.66 0.971562
Target:  5'- uCGGUUcGAACcGcCGCCCGCucGCGcGCu -3'
miRNA:   3'- -GCCAAaCUUGaC-GCGGGUGucCGU-CG- -5'
9006 5' -54.8 NC_002512.2 + 127993 0.66 0.971562
Target:  5'- cCGGgcgagaGGAC-GCGCCCG-AGGCAGa -3'
miRNA:   3'- -GCCaaa---CUUGaCGCGGGUgUCCGUCg -5'
9006 5' -54.8 NC_002512.2 + 157136 0.66 0.971562
Target:  5'- gGGUcgGcGGC-GgGCCCgggGCGGGCGGCg -3'
miRNA:   3'- gCCAaaC-UUGaCgCGGG---UGUCCGUCG- -5'
9006 5' -54.8 NC_002512.2 + 227187 0.66 0.968687
Target:  5'- cCGGgg-GAGCggcagGCGCucCCGCgcgcggaccaggAGGCGGCg -3'
miRNA:   3'- -GCCaaaCUUGa----CGCG--GGUG------------UCCGUCG- -5'
9006 5' -54.8 NC_002512.2 + 101263 0.66 0.968687
Target:  5'- aGGUcgucgUGGGgaGCGUaCACGGGCAGg -3'
miRNA:   3'- gCCAa----ACUUgaCGCGgGUGUCCGUCg -5'
9006 5' -54.8 NC_002512.2 + 99011 0.66 0.968687
Target:  5'- uGGgagacGAGCgacucGCGCCCGguGGgGGCc -3'
miRNA:   3'- gCCaaa--CUUGa----CGCGGGUguCCgUCG- -5'
9006 5' -54.8 NC_002512.2 + 74173 0.66 0.968687
Target:  5'- uCGGgauccaggUGGAg-GCGCCgGCacaGGGCGGCg -3'
miRNA:   3'- -GCCaa------ACUUgaCGCGGgUG---UCCGUCG- -5'
9006 5' -54.8 NC_002512.2 + 105994 0.66 0.968687
Target:  5'- aGGUaggUGAACUugacgGCGa--ACGGGCGGCg -3'
miRNA:   3'- gCCAa--ACUUGA-----CGCgggUGUCCGUCG- -5'
9006 5' -54.8 NC_002512.2 + 75240 0.66 0.966867
Target:  5'- gCGGUgacGAGC-GCGgCCGCGucccguccccacgauGGCGGCg -3'
miRNA:   3'- -GCCAaa-CUUGaCGCgGGUGU---------------CCGUCG- -5'
9006 5' -54.8 NC_002512.2 + 34047 0.66 0.965612
Target:  5'- cCGGUUgcucGAgGCgUGC-CCCACGacGGCGGCg -3'
miRNA:   3'- -GCCAAa---CU-UG-ACGcGGGUGU--CCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.