miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9007 3' -52.9 NC_002512.2 + 38266 0.66 0.99439
Target:  5'- gCGAG-GGAUCGCGCga--GAAGacgCCGa -3'
miRNA:   3'- -GCUCgCCUAGUGCGacaaCUUCa--GGC- -5'
9007 3' -52.9 NC_002512.2 + 98341 0.66 0.993544
Target:  5'- cCGAGCGcGAcgaaCugGCcGUUGgcGUCCu -3'
miRNA:   3'- -GCUCGC-CUa---GugCGaCAACuuCAGGc -5'
9007 3' -52.9 NC_002512.2 + 135157 0.66 0.993544
Target:  5'- cCGGGCGGGguUCGC-CUGgauccuGGUCCGu -3'
miRNA:   3'- -GCUCGCCU--AGUGcGACaacu--UCAGGC- -5'
9007 3' -52.9 NC_002512.2 + 156516 0.66 0.992599
Target:  5'- uGGGCGGcGggGCGCg---GggGUCCGg -3'
miRNA:   3'- gCUCGCC-UagUGCGacaaCuuCAGGC- -5'
9007 3' -52.9 NC_002512.2 + 219491 0.66 0.991548
Target:  5'- gGGGCGGGUCAgacgaggaUGCUGgccGgcGUUCGg -3'
miRNA:   3'- gCUCGCCUAGU--------GCGACaa-CuuCAGGC- -5'
9007 3' -52.9 NC_002512.2 + 32702 0.66 0.990862
Target:  5'- cCGAGCGGGUCcaugaggacgaagagGCGCggGUgGAAGacggCCGu -3'
miRNA:   3'- -GCUCGCCUAG---------------UGCGa-CAaCUUCa---GGC- -5'
9007 3' -52.9 NC_002512.2 + 223021 0.66 0.990381
Target:  5'- aGGGaCGGGUCGuCGCccacuccGgcGAGGUCCGg -3'
miRNA:   3'- gCUC-GCCUAGU-GCGa------CaaCUUCAGGC- -5'
9007 3' -52.9 NC_002512.2 + 112478 0.66 0.990381
Target:  5'- gGAGCGGAUgACGCccu---GGUCCu -3'
miRNA:   3'- gCUCGCCUAgUGCGacaacuUCAGGc -5'
9007 3' -52.9 NC_002512.2 + 67953 0.67 0.986113
Target:  5'- aGAG-GGGUCGCGCcgGUucgccgUGgcGUCCGc -3'
miRNA:   3'- gCUCgCCUAGUGCGa-CA------ACuuCAGGC- -5'
9007 3' -52.9 NC_002512.2 + 111905 0.67 0.986113
Target:  5'- aCGAGCGGc-CGCGCggGUUGuucgGGUgCCGg -3'
miRNA:   3'- -GCUCGCCuaGUGCGa-CAACu---UCA-GGC- -5'
9007 3' -52.9 NC_002512.2 + 227551 0.67 0.986113
Target:  5'- aGGGCGGGUC-CGCgaccGAGGccUCCGg -3'
miRNA:   3'- gCUCGCCUAGuGCGacaaCUUC--AGGC- -5'
9007 3' -52.9 NC_002512.2 + 19855 0.67 0.984407
Target:  5'- gGAGCGGAagGCGCgacgGUacggcUGGacguuGGUCCGc -3'
miRNA:   3'- gCUCGCCUagUGCGa---CA-----ACU-----UCAGGC- -5'
9007 3' -52.9 NC_002512.2 + 140872 0.67 0.982547
Target:  5'- uCGcuCGGAUCGCGCUGcccGAcGUCCc -3'
miRNA:   3'- -GCucGCCUAGUGCGACaa-CUuCAGGc -5'
9007 3' -52.9 NC_002512.2 + 24328 0.68 0.980525
Target:  5'- -cGGCGG-UCGgGCUGUUGAuGUUCa -3'
miRNA:   3'- gcUCGCCuAGUgCGACAACUuCAGGc -5'
9007 3' -52.9 NC_002512.2 + 46328 0.68 0.980313
Target:  5'- cCGAGCGGAuggauuaUUugGUgcagacgGUUGAcgccGGUCCGc -3'
miRNA:   3'- -GCUCGCCU-------AGugCGa------CAACU----UCAGGC- -5'
9007 3' -52.9 NC_002512.2 + 118329 0.68 0.975962
Target:  5'- aCGGGaCGGA-CGCGCUGgUGGAGcgCCc -3'
miRNA:   3'- -GCUC-GCCUaGUGCGACaACUUCa-GGc -5'
9007 3' -52.9 NC_002512.2 + 176685 0.68 0.973408
Target:  5'- --uGCGGAUC-CGCUGUcuuuuuagaucUGcuGUCCGg -3'
miRNA:   3'- gcuCGCCUAGuGCGACA-----------ACuuCAGGC- -5'
9007 3' -52.9 NC_002512.2 + 116366 0.69 0.964575
Target:  5'- aCGGGgaGGGUCAUGCUGgcccUGcGGUCCc -3'
miRNA:   3'- -GCUCg-CCUAGUGCGACa---ACuUCAGGc -5'
9007 3' -52.9 NC_002512.2 + 219857 0.69 0.964575
Target:  5'- gGGGCGGAUCGCGgacggGUgacGAGG-CCGg -3'
miRNA:   3'- gCUCGCCUAGUGCga---CAa--CUUCaGGC- -5'
9007 3' -52.9 NC_002512.2 + 47400 0.69 0.961221
Target:  5'- gGAGCuGGA-CGCGCUGgUGAAGaugaUCCa -3'
miRNA:   3'- gCUCG-CCUaGUGCGACaACUUC----AGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.