miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9007 5' -55.1 NC_002512.2 + 188900 0.66 0.974934
Target:  5'- --aGUgCUgaAGGUGCgCGCGCGGUCGg -3'
miRNA:   3'- gugCAaGAggUCCACG-GCGUGCUAGU- -5'
9007 5' -55.1 NC_002512.2 + 223290 0.66 0.974934
Target:  5'- gCGCGcagCUaCAuGGUGCCGC-CGGUCGa -3'
miRNA:   3'- -GUGCaa-GAgGU-CCACGGCGuGCUAGU- -5'
9007 5' -55.1 NC_002512.2 + 142435 0.66 0.974934
Target:  5'- gCGCG-UCUCCGGuuuccguucuGUGCuguuCGCAUGAUCGu -3'
miRNA:   3'- -GUGCaAGAGGUC----------CACG----GCGUGCUAGU- -5'
9007 5' -55.1 NC_002512.2 + 113662 0.66 0.972322
Target:  5'- --gGUUCUCCGGGgGgCGCACcuucGUCAg -3'
miRNA:   3'- gugCAAGAGGUCCaCgGCGUGc---UAGU- -5'
9007 5' -55.1 NC_002512.2 + 57477 0.66 0.972322
Target:  5'- gACGUgCUCCA---GCCGgGCGGUCAu -3'
miRNA:   3'- gUGCAaGAGGUccaCGGCgUGCUAGU- -5'
9007 5' -55.1 NC_002512.2 + 96310 0.66 0.966519
Target:  5'- cCGCGggCgggCC-GGUcGCCGCACGA-CAg -3'
miRNA:   3'- -GUGCaaGa--GGuCCA-CGGCGUGCUaGU- -5'
9007 5' -55.1 NC_002512.2 + 18188 0.66 0.966519
Target:  5'- gGCGcgCUCCucGUGCCGCaucacgucgcgcACGGUCc -3'
miRNA:   3'- gUGCaaGAGGucCACGGCG------------UGCUAGu -5'
9007 5' -55.1 NC_002512.2 + 220327 0.66 0.959905
Target:  5'- -cCGggCUCCGGGggGCCGgACGGccUCGu -3'
miRNA:   3'- guGCaaGAGGUCCa-CGGCgUGCU--AGU- -5'
9007 5' -55.1 NC_002512.2 + 137360 0.66 0.959905
Target:  5'- cCGCGg---CCGGGUagauCCGCGCGGUCu -3'
miRNA:   3'- -GUGCaagaGGUCCAc---GGCGUGCUAGu -5'
9007 5' -55.1 NC_002512.2 + 75555 0.66 0.959553
Target:  5'- cCGCGggCUcgCCGGGgcgggGCCGCcgccgucGCGGUCGa -3'
miRNA:   3'- -GUGCaaGA--GGUCCa----CGGCG-------UGCUAGU- -5'
9007 5' -55.1 NC_002512.2 + 95237 0.67 0.954005
Target:  5'- -uCGUUCUCCggagggggcguccggAGG-GCCGCGCGGc-- -3'
miRNA:   3'- guGCAAGAGG---------------UCCaCGGCGUGCUagu -5'
9007 5' -55.1 NC_002512.2 + 143806 0.67 0.948384
Target:  5'- gGCuGUUCUCCcGGUccaugucgaugaGCCGgACGAUCu -3'
miRNA:   3'- gUG-CAAGAGGuCCA------------CGGCgUGCUAGu -5'
9007 5' -55.1 NC_002512.2 + 175293 0.67 0.944101
Target:  5'- aCACGUaCUCgGGGUGCaGCGuCGAcaUCAa -3'
miRNA:   3'- -GUGCAaGAGgUCCACGgCGU-GCU--AGU- -5'
9007 5' -55.1 NC_002512.2 + 65873 0.67 0.939592
Target:  5'- -gUGUUCUCCAGGgGCucgagcgacaCGC-CGAUCAu -3'
miRNA:   3'- guGCAAGAGGUCCaCG----------GCGuGCUAGU- -5'
9007 5' -55.1 NC_002512.2 + 95861 0.67 0.939592
Target:  5'- gGCGUcCUcCCAGG-GCCGCGCGc--- -3'
miRNA:   3'- gUGCAaGA-GGUCCaCGGCGUGCuagu -5'
9007 5' -55.1 NC_002512.2 + 122373 0.68 0.936777
Target:  5'- aACGggUUCCGGGUccaGCCGCAgagaccgcugcgggcCGGUCGc -3'
miRNA:   3'- gUGCaaGAGGUCCA---CGGCGU---------------GCUAGU- -5'
9007 5' -55.1 NC_002512.2 + 115905 0.68 0.934856
Target:  5'- cCAUGUUCaCCc--UGCUGCACGAUCAc -3'
miRNA:   3'- -GUGCAAGaGGuccACGGCGUGCUAGU- -5'
9007 5' -55.1 NC_002512.2 + 168201 0.68 0.934856
Target:  5'- gCACGccucgUCUCCGGGUGuUUGUACGGcUCGc -3'
miRNA:   3'- -GUGCa----AGAGGUCCAC-GGCGUGCU-AGU- -5'
9007 5' -55.1 NC_002512.2 + 112889 0.68 0.929381
Target:  5'- gGCGUUCUCgucGGUcGCCGCGucgcggaccagcuCGAUCAg -3'
miRNA:   3'- gUGCAAGAGgu-CCA-CGGCGU-------------GCUAGU- -5'
9007 5' -55.1 NC_002512.2 + 142184 0.68 0.919272
Target:  5'- uCGCGgcgUCUCCGcGUcGCCGCGCGucccGUCGg -3'
miRNA:   3'- -GUGCa--AGAGGUcCA-CGGCGUGC----UAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.